Feature point tracking and trajectory analysis for video imaging in cell biology
- PMID: 16043363
- DOI: 10.1016/j.jsb.2005.06.002
Feature point tracking and trajectory analysis for video imaging in cell biology
Abstract
This paper presents a computationally efficient, two-dimensional, feature point tracking algorithm for the automated detection and quantitative analysis of particle trajectories as recorded by video imaging in cell biology. The tracking process requires no a priori mathematical modeling of the motion, it is self-initializing, it discriminates spurious detections, and it can handle temporary occlusion as well as particle appearance and disappearance from the image region. The efficiency of the algorithm is validated on synthetic video data where it is compared to existing methods and its accuracy and precision are assessed for a wide range of signal-to-noise ratios. The algorithm is well suited for video imaging in cell biology relying on low-intensity fluorescence microscopy. Its applicability is demonstrated in three case studies involving transport of low-density lipoproteins in endosomes, motion of fluorescently labeled Adenovirus-2 particles along microtubules, and tracking of quantum dots on the plasma membrane of live cells. The present automated tracking process enables the quantification of dispersive processes in cell biology using techniques such as moment scaling spectra.
Similar articles
-
Tracking single particles: a user-friendly quantitative evaluation.Phys Biol. 2005 Mar;2(1):60-72. doi: 10.1088/1478-3967/2/1/008. Phys Biol. 2005. PMID: 16204858
-
A simulation and estimation framework for intracellular dynamics and trafficking in video-microscopy and fluorescence imagery.Med Image Anal. 2009 Feb;13(1):132-42. doi: 10.1016/j.media.2008.06.017. Epub 2008 Jul 17. Med Image Anal. 2009. PMID: 18723385
-
Precise particle tracking against a complicated background: polynomial fitting with Gaussian weight.Phys Biol. 2007 Oct 9;4(3):220-7. doi: 10.1088/1478-3975/4/3/008. Phys Biol. 2007. PMID: 17928660
-
Fluorescence lifetime imaging microscopy.Methods Cell Biol. 2007;81:495-524. doi: 10.1016/S0091-679X(06)81024-1. Methods Cell Biol. 2007. PMID: 17519182 Review. No abstract available.
-
Quantification and its applications in fluorescent microscopy imaging.Traffic. 2009 Aug;10(8):951-61. doi: 10.1111/j.1600-0854.2009.00938.x. Epub 2009 May 5. Traffic. 2009. PMID: 19500318 Review.
Cited by
-
Single molecule microscopy to profile the effect of zinc status on transcription factor dynamics.Sci Rep. 2022 Oct 22;12(1):17789. doi: 10.1038/s41598-022-22634-x. Sci Rep. 2022. PMID: 36273101 Free PMC article.
-
Multi-feature-Based Robust Cell Tracking.Ann Biomed Eng. 2023 Mar;51(3):604-617. doi: 10.1007/s10439-022-03073-1. Epub 2022 Sep 14. Ann Biomed Eng. 2023. PMID: 36103061
-
Cell-free transmission of human adenovirus by passive mass transfer in cell culture simulated in a computer model.J Virol. 2012 Sep;86(18):10123-37. doi: 10.1128/JVI.01102-12. Epub 2012 Jul 11. J Virol. 2012. PMID: 22787215 Free PMC article.
-
Ligand sensing enhances bacterial flagellar motor output via stator recruitment.Elife. 2021 Apr 6;10:e62848. doi: 10.7554/eLife.62848. Elife. 2021. PMID: 33821791 Free PMC article.
-
Background-suppressed live visualization of genomic loci with an improved CRISPR system based on a split fluorophore.Genome Res. 2020 Sep;30(9):1306-1316. doi: 10.1101/gr.260018.119. Epub 2020 Sep 4. Genome Res. 2020. PMID: 32887690 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources