System for accepting server predictions in CASP6
- PMID: 16187344
- DOI: 10.1002/prot.20719
System for accepting server predictions in CASP6
Abstract
We describe the new CASP system for collecting and verifying predictions generated by servers. The system was developed to ensure reliable execution of the server assessment part of CASP, with particular emphasis on data consistency. Following the principle that predictions should not be modified by anyone but their authors and to allow a later meaningful assessment, submissions are now verified for correctness of format and contents within the strict 48 hour CASP deadlines for this type of submission. This article also provides an overview of the rules governing server participation in CASP6 and some statistics pertaining to servers in CASP6.
2005 Wiley-Liss, Inc.
References
REFERENCES
-
- Zemla A, Venclovas C, Reinhardt A, Fidelis K, Hubbard T. Numerical criteria for the evaluation of ab initio predictions of protein structure. Proteins 1997; Suppl 1: 140-150.
-
- Fischer D, Barret C, Bryson K, Elofsson A, Godzik A, Jones D, Karplus KJ, Kelley LA, MacCallum RM, Pawowski K, Rost B, Rychlewski L, Sternberg M. CAFASP-1: critical assessment of fully automated structure prediction methods. Proteins 1999; Suppl 3: 209-217.
-
- Eyrich VA, Rost B. META-PP: single interface to crucial prediction servers. Nucleic Acids Res 2003; 31: 3308-3310.
-
- Koh IY, Eyrich VA, Marti-Renom MA, Przybylski D, Madhusudhan MS, Eswar N, Grana O, Pazos F, Valencia A, Sali A, Rost B. EVA: evaluation of protein structure prediction servers. Nucleic Acids Res 2003; 31: 3311-3315.
-
- Available online at http://www2.predictioncenter.org/Serv/menu_frames.html
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