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. 2006 Jan 1;34(Database issue):D16-20.
doi: 10.1093/nar/gkj157.

GenBank

Dennis A Benson  1 , Ilene Karsch-Mizrachi, David J Lipman, James Ostell, David L Wheeler
Affiliations

GenBank

Dennis A Benson et al. Nucleic Acids Res. .

Abstract

GenBank (R) is a comprehensive database that contains publicly available DNA sequences for more than 205 000 named organisms, obtained primarily through submissions from individual laboratories and batch submissions from large-scale sequencing projects. Most submissions are made using the Web-based BankIt or standalone Sequin programs and accession numbers are assigned by GenBank staff upon receipt. Daily data exchange with the EMBL Data Library in Europe and the DNA Data Bank of Japan ensures worldwide coverage. GenBank is accessible through NCBI's retrieval system, Entrez, which integrates data from the major DNA and protein sequence databases along with taxonomy, genome, mapping, protein structure and domain information, and the biomedical journal literature via PubMed. BLAST provides sequence similarity searches of GenBank and other sequence databases. Complete bimonthly releases and daily updates of the GenBank database are available by FTP. To access GenBank and its related retrieval and analysis services, go to the NCBI Homepage at www.ncbi.nlm.nih.gov.

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References

    1. Benson D.A., Karsch-Mizrachi I., Lipman D.J., Ostell J., Wheeler D.L. GenBank: Update. Nucleic Acids Res. 2005;33:D34–D38. - PMC - PubMed
    1. Kanz C., Aldebert P., Althorpe N., Baker W., Baldwin A., Bates K., Browne P., van den Broek A., Castro M., Cochrane G., et al. The EMBL Nucleotide Sequence Database. Nucleic Acids Res. 2005;33:D29–D33. - PMC - PubMed
    1. Tateno Y., Saitou N., Okubo K., Sugawara H., Gojobori T. DDBJ in collaboration with mass-sequencing teams on annotation. Nucleic Acids Res. 2005;33:D25–D28. - PMC - PubMed
    1. Wheeler D.L., Barrett T., Benson D.A., Bryant S.H., Canese K., Chetvernin V., Church D.M., DiCuccio M., Edgar R., Federhen S., et al. Database resources of the National Center for Biotechnology Information. Nucleic Acids Res. 2006;34:D173–D180. - PMC - PubMed
    1. Boguski M.S., Lowe T.M., Tolstoshev C.M. dbEST—database for “expressed sequence tags”. Nature Genet. 1993;4:332–333. - PubMed

Publication types