Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
- PMID: 16403788
- DOI: 10.1093/bioinformatics/btk043
Haloferax volcanii PitA: an example of functional interaction between the Pfam chlorite dismutase and antibiotic biosynthesis monooxygenase families?
Abstract
A curious fusion between chlorite dismutase-like and antibiotic biosynthesis monooxygenase-like domains within a single open reading frame has been revealed by both sequence homology and structural modeling in Haloferax volcanii PitA and its homologues in other halophilic archaea. While this fusion may reflect an environmental adaptation to life in hypersaline environments and hence one specific to haloarchaea, PitA and its homologues may represent a paradigm of biologically-relevant interplay between these two distinct activities in accordance with the Rosetta Stone approach.
Similar articles
-
PSIbase: a database of Protein Structural Interactome map (PSIMAP).Bioinformatics. 2005 May 15;21(10):2541-3. doi: 10.1093/bioinformatics/bti366. Epub 2005 Mar 3. Bioinformatics. 2005. PMID: 15749693
-
Growth phenotype analysis of heme synthetic enzymes in a halophilic archaeon, Haloferax volcanii.PLoS One. 2017 Dec 28;12(12):e0189913. doi: 10.1371/journal.pone.0189913. eCollection 2017. PLoS One. 2017. PMID: 29284023 Free PMC article.
-
Cloning, expression, and purification of functional Sec11a and Sec11b, type I signal peptidases of the archaeon Haloferax volcanii.J Bacteriol. 2006 Mar;188(5):1911-9. doi: 10.1128/JB.188.5.1911-1919.2006. J Bacteriol. 2006. PMID: 16484202 Free PMC article.
-
Predicting protein function from sequence and structural data.Curr Opin Struct Biol. 2005 Jun;15(3):275-84. doi: 10.1016/j.sbi.2005.04.003. Curr Opin Struct Biol. 2005. PMID: 15963890 Review.
-
Prediction of Ras-effector interactions using position energy matrices.Bioinformatics. 2007 Sep 1;23(17):2226-30. doi: 10.1093/bioinformatics/btm336. Epub 2007 Jun 28. Bioinformatics. 2007. PMID: 17599936
Cited by
-
Haloferax volcanii for biotechnology applications: challenges, current state and perspectives.Appl Microbiol Biotechnol. 2020 Feb;104(4):1371-1382. doi: 10.1007/s00253-019-10314-2. Epub 2019 Dec 20. Appl Microbiol Biotechnol. 2020. PMID: 31863144 Free PMC article. Review.
-
Oxygen Generation via Water Splitting by a Novel Biogenic Metal Ion-Binding Compound.Appl Environ Microbiol. 2021 Jun 25;87(14):e0028621. doi: 10.1128/AEM.00286-21. Epub 2021 Jun 25. Appl Environ Microbiol. 2021. PMID: 33962982 Free PMC article.
-
Hundreds of novel composite genes and chimeric genes with bacterial origins contributed to haloarchaeal evolution.Genome Biol. 2018 Jun 7;19(1):75. doi: 10.1186/s13059-018-1454-9. Genome Biol. 2018. PMID: 29880023 Free PMC article.
-
Chlorite dismutases - a heme enzyme family for use in bioremediation and generation of molecular oxygen.Biotechnol J. 2014 Apr;9(4):461-73. doi: 10.1002/biot.201300210. Epub 2014 Feb 12. Biotechnol J. 2014. PMID: 24519858 Free PMC article. Review.
-
Posttranslational modification of the 20S proteasomal proteins of the archaeon Haloferax volcanii.J Bacteriol. 2006 Nov;188(21):7521-30. doi: 10.1128/JB.00943-06. Epub 2006 Sep 1. J Bacteriol. 2006. PMID: 16950923 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources
Other Literature Sources
Medical
Molecular Biology Databases