doi: 10.1109/csb.2004.1332453.
Calculation, visualization, and manipulation of MASTs (Maximum Agreement Subtrees)
Affiliations
- PMID: 16448033
- DOI: 10.1109/csb.2004.1332453
Item in Clipboard
Calculation, visualization, and manipulation of MASTs (Maximum Agreement Subtrees)
Proc IEEE Comput Syst Bioinform Conf.
2004.
Abstract
Phylogenetic trees are used to represent the evolutionary history of a set of species. Comparison of multiple phylogenetic trees can help researchers find the common classification of a tree group, compare tree construction inferences or obtain distances between trees. We present TreeAnalyzer, a freely available package for phylogenetic tree comparison. A MAST (Maximum Agreement Subtree) algorithm is implemented to compare the trees. Additional features of this software include tree comparison, visualization, manipulation, labeling, and printing.
Availability: http://www.cs.uga.edu/~eileen/TreeAnalyzer.
Similar articles
-
Interactive visualization software for exploring phylogenetic trees and clades.Bioinformatics. 2008 Mar 15;24(6):868-9. doi: 10.1093/bioinformatics/btn038. Epub 2008 Feb 8. Bioinformatics. 2008. PMID: 18263642
-
CTree: comparison of clusters between phylogenetic trees made easy.Bioinformatics. 2007 Nov 1;23(21):2952-3. doi: 10.1093/bioinformatics/btm410. Epub 2007 Aug 23. Bioinformatics. 2007. PMID: 17717036
-
Visualizing phylogenetic trees using TreeView.Curr Protoc Bioinformatics. 2002 Aug;Chapter 6:Unit 6.2. doi: 10.1002/0471250953.bi0602s01. Curr Protoc Bioinformatics. 2002. PMID: 18792942
-
Phylotastic: Improving Access to Tree-of-Life Knowledge With Flexible, on-the-Fly Delivery of Trees.Evol Bioinform Online. 2020 Apr 6;16:1176934319899384. doi: 10.1177/1176934319899384. eCollection 2020. Evol Bioinform Online. 2020. PMID: 32372858 Free PMC article. Review.
-
Automated synthesis and visualization of a chemotherapy treatment regimen network.Stud Health Technol Inform. 2013;192:62-6. Stud Health Technol Inform. 2013. PMID: 23920516 Free PMC article. Review.
Cited by
-
Enumerating all maximal frequent subtrees in collections of phylogenetic trees.Algorithms Mol Biol. 2014 Jun 18;9:16. doi: 10.1186/1748-7188-9-16. eCollection 2014. Algorithms Mol Biol. 2014. PMID: 25061474 Free PMC article.