Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
Review
. 2006 Mar 3;21(5):589-94.
doi: 10.1016/j.molcel.2006.02.012.

Biomedical language processing: what's beyond PubMed?

Lawrence Hunter  1 , K Bretonnel Cohen
Affiliations
Review

Biomedical language processing: what's beyond PubMed?

Lawrence Hunter et al. Mol Cell. .
No abstract available

PubMed Disclaimer

Figures

Figure 1
Figure 1
Growth in the Biomedical Literature, 1986–2005 Orange circles show the number of new articles indexed in MEDLINE with a publication date in each year. Blue squares show the total number of articles indexed at the end of each year. The light lines show exponential curves fitted to each series, and the corresponding formulae show growth rates and goodness of fit measures for both curves.
Figure 2
Figure 2
Some Levels of Linguistic Analysis The gene/protein layer contains LocusLink IDs. The ontology layer contains MeSH concepts. POS is part of speech. NN is a singular noun, IN is a preposition, VBZ is a third-person singular present-tense verb, JJ is an adjective, and CC is a coordinating conjunction. Adapted from Nakov et al. (2005).
See this image and copyright information in PMC

References

    1. Alfarano C, Andrade CE, Anthony K, Bahroos N, Bajec M, Bantoft K, Betel D, Bobechko B, Boutilier K, Burgess E, et al. The Biomolecular Interaction Network Database and related tools 2005 update. Nucleic Acids Res. 2005;33(Database issue):D418–D424. - PMC - PubMed
    1. Ananiadou S, McNaught J. Text Mining for Biology and Biomedicine. Norwood, MA: Artech; 2006.
    1. Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT. Gene Ontology: tool for the unification of biology. The Gene Ontology Consortium. Nat Genet. 2000;25:25–29. - PMC - PubMed
    1. Bodenreider O. Lexical, terminological and ontological resources for biological text mining. In: Ananiadou S, McNaught J, editors. Text Mining for Biology and Biomedicine. Norwood, MA: Artech; 2006. pp. 43–66.
    1. Caporaso JG, Baumgartner WA, Jr, Johnson HL, Paquette J, Hunter L. The Fourteenth Text Retrieval Conference (TREC 2005) National Institute of Standards and Technology; 2005. Concept recognition improves performance on the TREC Genomics tasks.

LinkOut - more resources