Phasing macromolecular structures with UV-induced structural changes
- PMID: 16615919
- DOI: 10.1016/j.str.2006.02.007
Phasing macromolecular structures with UV-induced structural changes
Abstract
Experimental phasing of macromolecular crystal structures relies on the accurate measurement of two or more sets of reflections from isomorphous crystals, where the scattering power of a few atoms is different for each set. Recently, it was demonstrated that X-ray-induced intensity differences can also contain phasing information, exploiting specific structural changes characteristic of X-ray damage. This method (radiation damage-induced phasing; RIP) has the advantage that it can be performed on a single crystal of the native macromolecule. However, a drawback is that X-rays introduce many small changes to both solvent and macromolecule. In this study, ultraviolet (UV) radiation has been used to induce specific changes in the macromolecule alone, leading to a larger contrast between radiation-susceptible and nonsusceptible sites. Unlike X-ray RIP, UV RIP does not require the use of a synchrotron. The method has been demonstrated for a series of macromolecules.
Comment in
-
Shedding UV light on the phase problem.Structure. 2006 Apr;14(4):629-30. doi: 10.1016/j.str.2006.03.004. Structure. 2006. PMID: 16615902
Similar articles
-
Differential specific radiation damage in the Cu II-bound and Pd II-bound forms of an alpha-helical foldamer: a case study of crystallographic phasing by RIP and SAD.Acta Crystallogr D Biol Crystallogr. 2008 Mar;64(Pt 3):264-72. doi: 10.1107/S0907444907065948. Epub 2008 Feb 20. Acta Crystallogr D Biol Crystallogr. 2008. PMID: 18323621
-
Single isomorphous replacement phasing of selenomethionine-containing proteins using UV-induced radiation damage.Acta Crystallogr D Biol Crystallogr. 2011 Jan;67(Pt 1):32-44. doi: 10.1107/S090744491004299X. Epub 2010 Dec 16. Acta Crystallogr D Biol Crystallogr. 2011. PMID: 21206060
-
Phasing in the presence of severe site-specific radiation damage through dose-dependent modelling of heavy atoms.Acta Crystallogr D Biol Crystallogr. 2004 Jun;60(Pt 6):1024-31. doi: 10.1107/S0907444904006377. Epub 2004 May 21. Acta Crystallogr D Biol Crystallogr. 2004. PMID: 15159561
-
When X-rays modify the protein structure: radiation damage at work.Trends Biochem Sci. 2005 Apr;30(4):213-9. doi: 10.1016/j.tibs.2005.02.009. Trends Biochem Sci. 2005. PMID: 15817398 Review.
-
Radiation damage to protein specimens from electron beam imaging and diffraction: a mini-review of anti-damage approaches, with special reference to synchrotron X-ray crystallography.J Synchrotron Radiat. 2007 Jan;14(Pt 1):116-27. doi: 10.1107/S0909049506052307. Epub 2006 Dec 15. J Synchrotron Radiat. 2007. PMID: 17211078 Review.
Cited by
-
Identification of patterns in diffraction intensities affected by radiation exposure.J Synchrotron Radiat. 2013 Jan;20(Pt 1):37-48. doi: 10.1107/S0909049512048807. Epub 2012 Dec 6. J Synchrotron Radiat. 2013. PMID: 23254654 Free PMC article.
-
'Broken symmetries' in macromolecular crystallography: phasing from unmerged data.Acta Crystallogr D Biol Crystallogr. 2010 Apr;66(Pt 4):447-57. doi: 10.1107/S0907444909053578. Epub 2010 Mar 24. Acta Crystallogr D Biol Crystallogr. 2010. PMID: 20382998 Free PMC article.
-
Single-support serial isomorphous replacement phasing.Acta Crystallogr D Struct Biol. 2022 Jun 1;78(Pt 6):716-724. doi: 10.1107/S2059798322003977. Epub 2022 May 9. Acta Crystallogr D Struct Biol. 2022. PMID: 35647919 Free PMC article.
-
Automatic loop centring with a high-precision goniometer head at the SLS macromolecular crystallography beamlines.J Synchrotron Radiat. 2011 Jul;18(Pt 4):595-600. doi: 10.1107/S0909049511011848. Epub 2011 May 14. J Synchrotron Radiat. 2011. PMID: 21685676 Free PMC article.
-
Integrated nonlinear optical imaging microscope for on-axis crystal detection and centering at a synchrotron beamline.J Synchrotron Radiat. 2013 Jul;20(Pt 4):531-40. doi: 10.1107/S0909049513007942. Epub 2013 May 3. J Synchrotron Radiat. 2013. PMID: 23765294 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous