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. 2006 Mar;70(Pt 2):277-9.
doi: 10.1111/j.1529-8817.2005.00225.x.

Program report: GENECOUNTING support programs

D Curtis  1 , J Knight, P C Sham
Affiliations

Program report: GENECOUNTING support programs

D Curtis et al. Ann Hum Genet. 2006 Mar.

Abstract

We describe a suite of programs which enhance the usability of GENECOUNTING, a program for estimating haplotype frequencies in unrelated subjects. The programs, called RUNGC, SCANASSOC, COMPGR, SCANGROUP and LDPAIRS, carry out likelihood ratio tests and permutation tests to detect differences in haplotype frequencies between cases and controls,or between predefined groups, and output likely haplotype assignments and tables of linkage disequilibrium statistics between all pairs of markers in a dataset.

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