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Comparative Study
. 2006 Sep 15;22(18):2308-9.
doi: 10.1093/bioinformatics/btl389. Epub 2006 Jul 14.

SynView: a GBrowse-compatible approach to visualizing comparative genome data

Haiming Wang  1 , Yanqi Su, Aaron J Mackey, Eileen T Kraemer, Jessica C Kissinger
Affiliations
Comparative Study

SynView: a GBrowse-compatible approach to visualizing comparative genome data

Haiming Wang et al. Bioinformatics. .

Abstract

We present SynView, a simple and generic approach to dynamically visualize multi-species comparative genome data. It is a light-weight application based on the popular and configurable web-based GBrowse framework. It can be used with a variety of databases and provides the user with a high degree of interactivity. The tool is written in Perl and runs on top of the GBrowse framework. It is in use in the PlasmoDB (http://www.PlasmoDB.org) and the CryptoDB (http://www.CryptoDB.org) projects and can be easily integrated into other cross-species comparative genome projects.

Availability: The program and instructions are freely available at http://www.ApiDB.org/apps/SynView/

Contact: jkissing@uga.edu.

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