From 'omes to biology
- PMID: 16887002
- DOI: 10.1111/j.1365-2052.2006.01476.x
From 'omes to biology
Abstract
Technologies that have emerged from the genome project have dramatically increased our ability to generate data on the way in which organisms respond to their environments, how they execute their programmes of development and growth, and how these are altered in the development of disease states. However, our ability to analyse these large datasets has not kept pace with our ability to generate them and consequently new strategies must be developed to address the issues associated with their analysis. One approach that we have employed quite successfully is to look at data from microarrays (or proteomics or metabolomics experiments) not as independent datasets, but rather as elements of a much larger body of biological information across various scales that must be integrated with, and interpreted within, the context of such ancillary data. Here we outline the general approach and provide three examples from published studies of the way in which we have applied this strategy.
Similar articles
-
Where are we in genomics?J Physiol Pharmacol. 2005 Jun;56 Suppl 3:37-70. J Physiol Pharmacol. 2005. PMID: 16077195 Review.
-
[Development of antituberculous drugs: current status and future prospects].Kekkaku. 2006 Dec;81(12):753-74. Kekkaku. 2006. PMID: 17240921 Review. Japanese.
-
Functional genomics of hepatocellular carcinoma.Hepatology. 2006 Feb;43(2 Suppl 1):S145-50. doi: 10.1002/hep.21063. Hepatology. 2006. PMID: 16447291 Review.
-
Extracting biology from high-dimensional biological data.J Exp Biol. 2007 May;210(Pt 9):1507-17. doi: 10.1242/jeb.004432. J Exp Biol. 2007. PMID: 17449816
-
GARBAN II: an integrative framework for extracting biological information from proteomic and genomic data.Proteomics. 2006 Apr;6 Suppl 1:S12-5. doi: 10.1002/pmic.200500313. Proteomics. 2006. PMID: 16511812 Review.
Cited by
-
Linking toxicant physiological mode of action with induced gene expression changes in Caenorhabditis elegans.BMC Syst Biol. 2010 Mar 23;4:32. doi: 10.1186/1752-0509-4-32. BMC Syst Biol. 2010. PMID: 20331876 Free PMC article.
-
Confounding Factors in the Transcriptome Analysis of an In-Vivo Exposure Experiment.PLoS One. 2016 Jan 20;11(1):e0145252. doi: 10.1371/journal.pone.0145252. eCollection 2016. PLoS One. 2016. PMID: 26789003 Free PMC article.
-
Protein abundance ratios for global studies of prokaryotes.Proteomics. 2007 Aug;7(16):2904-19. doi: 10.1002/pmic.200700267. Proteomics. 2007. PMID: 17639608 Free PMC article. Review.
-
Automatic inference of multicellular regulatory networks using informative priors.Int J Comput Biol Drug Des. 2009;2(2):115-33. doi: 10.1504/IJCBDD.2009.028820. Epub 2009 Oct 3. Int J Comput Biol Drug Des. 2009. PMID: 20090166 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources