This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

Review

. 2006 Aug;24(8):959-61.

doi: 10.1038/nbt0806-959.

How does DNA sequence motif discovery work?

Patrik D'haeseleer¹

Affiliations

Affiliation

¹ Microbial Systems Division, Biosciences Directorate, Lawrence Livermore National Laboratory, 7000 East Ave., PO Box 808, L-448, Livermore, CA 94551, USA. patrikd@llnl.gov

PMID: 16900144
DOI: 10.1038/nbt0806-959

Review

How does DNA sequence motif discovery work?

Patrik D'haeseleer. Nat Biotechnol. 2006 Aug.

. 2006 Aug;24(8):959-61.

doi: 10.1038/nbt0806-959.

Author

Patrik D'haeseleer¹

Affiliation

¹ Microbial Systems Division, Biosciences Directorate, Lawrence Livermore National Laboratory, 7000 East Ave., PO Box 808, L-448, Livermore, CA 94551, USA. patrikd@llnl.gov

PMID: 16900144
DOI: 10.1038/nbt0806-959

No abstract available

PubMed Disclaimer

Similar articles

A profile-based deterministic sequential Monte Carlo algorithm for motif discovery.
Liang KC, Wang X, Anastassiou D. Liang KC, et al. Bioinformatics. 2008 Jan 1;24(1):46-55. doi: 10.1093/bioinformatics/btm543. Epub 2007 Nov 17. Bioinformatics. 2008. PMID: 18024972
Discovery of regulatory elements in vertebrates through comparative genomics.
Prakash A, Tompa M. Prakash A, et al. Nat Biotechnol. 2005 Oct;23(10):1249-56. doi: 10.1038/nbt1140. Nat Biotechnol. 2005. PMID: 16211068
Homology assessment and molecular sequence alignment.
Phillips AJ. Phillips AJ. J Biomed Inform. 2006 Feb;39(1):18-33. doi: 10.1016/j.jbi.2005.11.005. Epub 2005 Dec 9. J Biomed Inform. 2006. PMID: 16380300 Review.
Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.
Mrázek J, Xie S. Mrázek J, et al. Bioinformatics. 2006 Dec 15;22(24):3099-100. doi: 10.1093/bioinformatics/btl551. Epub 2006 Nov 8. Bioinformatics. 2006. PMID: 17095514
DNA sequence analysis linguistic tools: contrast vocabularies, compositional spectra and linguistic complexity.
Bolshoy A. Bolshoy A. Appl Bioinformatics. 2003;2(2):103-12. Appl Bioinformatics. 2003. PMID: 15130826 Review.

See all similar articles

Cited by

A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes.
Meng G, Mosig A, Vingron M. Meng G, et al. BMC Bioinformatics. 2010 May 20;11:267. doi: 10.1186/1471-2105-11-267. BMC Bioinformatics. 2010. PMID: 20487530 Free PMC article.
CompMoby: comparative MobyDick for detection of cis-regulatory motifs.
Chaivorapol C, Melton C, Wei G, Yeh RF, Ramalho-Santos M, Blelloch R, Li H. Chaivorapol C, et al. BMC Bioinformatics. 2008 Oct 27;9:455. doi: 10.1186/1471-2105-9-455. BMC Bioinformatics. 2008. PMID: 18950538 Free PMC article.
Global O-GlcNAc Levels Modulate Transcription of the Adipocyte Secretome during Chronic Insulin Resistance.
Wollaston-Hayden EE, Harris RB, Liu B, Bridger R, Xu Y, Wells L. Wollaston-Hayden EE, et al. Front Endocrinol (Lausanne). 2015 Jan 22;5:223. doi: 10.3389/fendo.2014.00223. eCollection 2014. Front Endocrinol (Lausanne). 2015. PMID: 25657638 Free PMC article.
Genome-scale identification of cell-wall related genes in Arabidopsis based on co-expression network analysis.
Wang S, Yin Y, Ma Q, Tang X, Hao D, Xu Y. Wang S, et al. BMC Plant Biol. 2012 Aug 9;12:138. doi: 10.1186/1471-2229-12-138. BMC Plant Biol. 2012. PMID: 22877077 Free PMC article.
DMINDA: an integrated web server for DNA motif identification and analyses.
Ma Q, Zhang H, Mao X, Zhou C, Liu B, Chen X, Xu Y. Ma Q, et al. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W12-9. doi: 10.1093/nar/gku315. Epub 2014 Apr 21. Nucleic Acids Res. 2014. PMID: 24753419 Free PMC article.

See all "Cited by" articles

Publication types

Actions

MeSH terms

Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions
Actions

Substances

Actions

LinkOut - more resources

Full Text Sources
- Nature Publishing Group
Other Literature Sources
- The Lens - Patent Citations Database