The use of high-pressure nuclear magnetic resonance to study protein folding
- PMID: 16957315
- DOI: 10.1385/1-59745-189-4:21
The use of high-pressure nuclear magnetic resonance to study protein folding
Abstract
Recent development of high-pressure cells for a variety of spectroscopic methods has enabled the use of pressure as one of the commonly used perturbations along with temperature and chemical perturbations to study folding/unfolding reactions of proteins. Although various high-pressure spectroscopy techniques have their own significance, high-pressure nuclear magnetic resonance (NMR) is unique in that it allows one to gain residue-specific and atom-detailed information from proteins under pressure. Furthermore, because of a peculiar volume property of a protein, high-pressure NMR allows one to obtain structural information of a protein in a wide conformational space from the bottom to the upper region of the folding funnel, giving structural reality for the "open" state of a protein proposed from hydrogen exchange. The method allows a link between equilibrium folding intermediates and the kinetic intermediates, and manifests a new view of proteins as dynamic entities amply fluctuating among the folded, intermediate, and unfolded sub ensembles. This chapter briefly summarizes the technique, the principle, and the ways to use high-pressure NMR for studying protein folding.
Similar articles
-
High-pressure NMR spectroscopy for characterizing folding intermediates and denatured states of proteins.Methods. 2004 Sep;34(1):133-43. doi: 10.1016/j.ymeth.2004.03.010. Methods. 2004. PMID: 15283922 Review.
-
Probing invisible, low-populated States of protein molecules by relaxation dispersion NMR spectroscopy: an application to protein folding.Acc Chem Res. 2008 Mar;41(3):442-51. doi: 10.1021/ar700189y. Epub 2008 Feb 15. Acc Chem Res. 2008. PMID: 18275162 Review.
-
High-pressure NMR techniques for the study of protein dynamics, folding and aggregation.J Magn Reson. 2017 Apr;277:179-185. doi: 10.1016/j.jmr.2017.01.009. J Magn Reson. 2017. PMID: 28363306
-
Monitoring protein unfolding transitions by NMR-spectroscopy.J Biomol NMR. 2022 Apr;76(1-2):3-15. doi: 10.1007/s10858-021-00389-3. Epub 2022 Jan 4. J Biomol NMR. 2022. PMID: 34984658 Free PMC article.
-
Conformational fluctuations of proteins revealed by variable pressure NMR.Biochim Biophys Acta. 2006 Mar;1764(3):331-45. doi: 10.1016/j.bbapap.2005.12.014. Epub 2006 Jan 18. Biochim Biophys Acta. 2006. PMID: 16448868 Review.
Cited by
-
Uncovering the role of the flexible C-terminal tail: A model study with Strep-tagged GFP.Biochim Open. 2015 Nov 30;2:1-8. doi: 10.1016/j.biopen.2015.11.004. eCollection 2016 Jun. Biochim Open. 2015. PMID: 29632832 Free PMC article.
-
Pressure-induced endocytic degradation of the Saccharomyces cerevisiae low-affinity tryptophan permease Tat1 is mediated by Rsp5 ubiquitin ligase and functionally redundant PPxY motif proteins.Eukaryot Cell. 2013 Jul;12(7):990-7. doi: 10.1128/EC.00049-13. Epub 2013 May 10. Eukaryot Cell. 2013. PMID: 23666621 Free PMC article.
-
Combining High-Pressure Perturbation with NMR Spectroscopy for a Structural and Dynamical Characterization of Protein Folding Pathways.Molecules. 2020 Nov 26;25(23):5551. doi: 10.3390/molecules25235551. Molecules. 2020. PMID: 33256081 Free PMC article. Review.
-
Microscopic analysis of bacterial motility at high pressure.Biophys J. 2012 Apr 18;102(8):1872-80. doi: 10.1016/j.bpj.2012.03.033. Biophys J. 2012. PMID: 22768943 Free PMC article.
-
Does a Similar 3D Structure Mean a Similar Folding Pathway? The Presence of a C-Terminal α-Helical Extension in the 3D Structure of MAX60 Drastically Changes the Folding Pathway Described for Other MAX-Effectors from Magnaporthe oryzae.Molecules. 2023 Aug 15;28(16):6068. doi: 10.3390/molecules28166068. Molecules. 2023. PMID: 37630320 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources