A DNA-centric look at protein-DNA complexes
- PMID: 16962964
- DOI: 10.1016/j.str.2006.08.003
A DNA-centric look at protein-DNA complexes
Abstract
The availability of many DNA-protein structures makes their classification timely and important. In this issue of Structure, the method of Akinori Sarai and his collaborators (Prabakaran et al., 2006) utilizes aspects of the binding interactions and DNA properties to identify seven clusters of structures with a classification scheme that differs significantly from previous approaches.
Comment on
-
Classification of protein-DNA complexes based on structural descriptors.Structure. 2006 Sep;14(9):1355-67. doi: 10.1016/j.str.2006.06.018. Structure. 2006. PMID: 16962967
Similar articles
-
Insights into protein-DNA interactions through structure network analysis.PLoS Comput Biol. 2008 Sep 5;4(9):e1000170. doi: 10.1371/journal.pcbi.1000170. PLoS Comput Biol. 2008. PMID: 18773096 Free PMC article.
-
Classification of protein-DNA complexes based on structural descriptors.Structure. 2006 Sep;14(9):1355-67. doi: 10.1016/j.str.2006.06.018. Structure. 2006. PMID: 16962967
-
[Theoretical approaches for evaluation of DNA-protein interactions].Biofizika. 2001 Nov-Dec;46(6):1010-21. Biofizika. 2001. PMID: 11771274 Russian.
-
Raman spectroscopy of protein and nucleic acid assemblies.Annu Rev Biophys Biomol Struct. 1999;28:1-27. doi: 10.1146/annurev.biophys.28.1.1. Annu Rev Biophys Biomol Struct. 1999. PMID: 10410793 Review.
-
Transient DNA / RNA-protein interactions.FEBS J. 2011 May;278(10):1643-50. doi: 10.1111/j.1742-4658.2011.08095.x. Epub 2011 Mar 30. FEBS J. 2011. PMID: 21410646 Review.
Cited by
-
PDA: an automatic and comprehensive analysis program for protein-DNA complex structures.BMC Genomics. 2009 Jul 7;10 Suppl 1(Suppl 1):S13. doi: 10.1186/1471-2164-10-S1-S13. BMC Genomics. 2009. PMID: 19594872 Free PMC article.
-
Re-visiting protein-centric two-tier classification of existing DNA-protein complexes.BMC Bioinformatics. 2012 Jul 16;13:165. doi: 10.1186/1471-2105-13-165. BMC Bioinformatics. 2012. PMID: 22800292 Free PMC article.
-
Insights into protein-DNA interactions through structure network analysis.PLoS Comput Biol. 2008 Sep 5;4(9):e1000170. doi: 10.1371/journal.pcbi.1000170. PLoS Comput Biol. 2008. PMID: 18773096 Free PMC article.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources