On stochastic models of dynamic disorder
- PMID: 16986904
- DOI: 10.1021/jp061992j
On stochastic models of dynamic disorder
Abstract
In this paper we investigate some general aspects of stochastic models of dynamic disorder. First, we reexamine the Zwanzig model for the kinetics of escape through a fluctuating hole. We show that this model is trivially connected to the canonical model of the broadening of the zero-phonon line (ZPL) in crystals. This provides a new perspective of the Wang-Wolynes expression for the rate of escape from a geometric bottleneck with non-Markovian Gaussian fluctuations. Motivated by recent single-molecule experiments, we examine more general examples of fluctuation processes from the perspective of cumulant expansions. Finally, we discuss recent single-molecule experiments probing enzyme turnover performed by Xie and co-workers.
Similar articles
-
Fluctuating enzymes: lessons from single-molecule studies.Acc Chem Res. 2005 Dec;38(12):923-31. doi: 10.1021/ar040133f. Acc Chem Res. 2005. PMID: 16359164 Review.
-
Single-molecule Michaelis-Menten equations.J Phys Chem B. 2005 Oct 20;109(41):19068-81. doi: 10.1021/jp051490q. J Phys Chem B. 2005. PMID: 16853459
-
Emergence of dynamic cooperativity in the stochastic kinetics of fluctuating enzymes.J Chem Phys. 2016 Aug 28;145(8):085103. doi: 10.1063/1.4961540. J Chem Phys. 2016. PMID: 27586952
-
Application of single-molecule spectroscopy in studying enzyme kinetics and mechanism.Methods Enzymol. 2008;450:129-57. doi: 10.1016/S0076-6879(08)03407-1. Methods Enzymol. 2008. PMID: 19152859 Review.
-
Random activation energy model and disordered kinetics, from static to dynamic disorder.J Phys Chem B. 2005 Nov 17;109(45):21241-57. doi: 10.1021/jp051085z. J Phys Chem B. 2005. PMID: 16853755
Cited by
-
COCIS: Markov processes in single molecule fluorescence.Curr Opin Colloid Interface Sci. 2007 Dec 1;12(6):285-296. doi: 10.1016/j.cocis.2007.08.014. Curr Opin Colloid Interface Sci. 2007. PMID: 19543444 Free PMC article.
-
Dynamic disorder in simple enzymatic reactions induces stochastic amplification of substrate.J R Soc Interface. 2017 Jul;14(132):20170311. doi: 10.1098/rsif.2017.0311. J R Soc Interface. 2017. PMID: 28747400 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources