Trial-by-trial estimation of amplitude and latency variability in neuronal spike trains
- PMID: 17000007
- DOI: 10.1016/j.jneumeth.2006.08.007
Trial-by-trial estimation of amplitude and latency variability in neuronal spike trains
Abstract
The rate function underlying single-trial spike trains can vary from trial to trial. We propose to estimate the amplitude and latency variability in single-trial neuronal spike trains on a trial-by-trial basis. The firing rate over a trial is modeled by a family of rate profiles with trial-invariant waveform and trial-dependent amplitude scaling factors and latency shifts. Using a Bayesian inference framework we derive an iterative fixed-point algorithm from which the single-trial amplitude scaling factors and latency shifts are estimated. We test the performance of the algorithm on simulated data and then apply it to actual neuronal recordings from the sensorimotor cortex of the monkey.
Similar articles
-
Estimation of single-trial multicomponent ERPs: differentially variable component analysis (dVCA).Biol Cybern. 2003 Dec;89(6):426-38. doi: 10.1007/s00422-003-0433-7. Epub 2003 Dec 4. Biol Cybern. 2003. PMID: 14673654
-
Elimination of response latency variability in neuronal spike trains.Biol Cybern. 2003 May;88(5):321-34. doi: 10.1007/s00422-002-0391-5. Biol Cybern. 2003. PMID: 12750895
-
Modelling spike trains and extracting response latency with Bayesian binning.J Physiol Paris. 2010 May-Sep;104(3-4):128-36. doi: 10.1016/j.jphysparis.2009.11.015. Epub 2009 Nov 27. J Physiol Paris. 2010. PMID: 19945532
-
A review of the methods for neuronal response latency estimation.Biosystems. 2015 Oct;136:23-34. doi: 10.1016/j.biosystems.2015.04.008. Epub 2015 May 1. Biosystems. 2015. PMID: 25939679 Review.
-
Statistical issues in the analysis of neuronal data.J Neurophysiol. 2005 Jul;94(1):8-25. doi: 10.1152/jn.00648.2004. J Neurophysiol. 2005. PMID: 15985692 Review.
Cited by
-
The Neural Basis for Response Latency in a Sensory-Motor Behavior.Cereb Cortex. 2020 May 14;30(5):3055-3073. doi: 10.1093/cercor/bhz294. Cereb Cortex. 2020. PMID: 31828292 Free PMC article.
-
An information-theoretic approach for evaluating probabilistic tuning functions of single neurons.Front Comput Neurosci. 2011 Mar 30;5:15. doi: 10.3389/fncom.2011.00015. eCollection 2011. Front Comput Neurosci. 2011. PMID: 21503137 Free PMC article.
-
Parametric models to relate spike train and LFP dynamics with neural information processing.Front Comput Neurosci. 2012 Jul 24;6:51. doi: 10.3389/fncom.2012.00051. eCollection 2012. Front Comput Neurosci. 2012. PMID: 22837745 Free PMC article.
-
A likelihood method for computing selection times in spiking and local field potential activity.J Neurophysiol. 2010 Dec;104(6):3705-20. doi: 10.1152/jn.00036.2010. Epub 2010 Sep 8. J Neurophysiol. 2010. PMID: 20884767 Free PMC article.
-
Neural dynamics of choice: single-trial analysis of decision-related activity in parietal cortex.J Neurosci. 2012 Sep 12;32(37):12684-701. doi: 10.1523/JNEUROSCI.5752-11.2012. J Neurosci. 2012. PMID: 22972993 Free PMC article.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources