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. 2006 Sep;12(9):1440-3.
doi: 10.3201/eid1209.041068.

Hepatitis C virus genotype 4 in Ugandan children and their mothers

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Hepatitis C virus genotype 4 in Ugandan children and their mothers

Robert J Biggar et al. Emerg Infect Dis. 2006 Sep.

Abstract

In Kampala, Uganda, in 2001, hepatitis C virus antibodies were found in 27 (4%) of 603 children and in 62 (12%) of 525 of their mothers. However, only approximately 10% of positive results were confirmed by reverse transcription-PCR, which suggests frequent false-positive results or viral clearance. All sequenced types were genotype 4.

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Figures

Figure 1
Figure 1
Estimated phylogenies of hepatitis C virus genotype 4; NS5B phylogenetic analysis based on 350 bp of NS5B nucleotide sequence. Ugandan sequences determined in this study are highlighted in black. Numerical values (presented when >60%) represent the statistical support for the tree topology as determined by 1,000 bootstrap replicates. Reference sequences for genotypes 1–3, 5, and 6 (7) were included in both analyses and retained as the outgroup. Accession numbers are provided in the text.
Figure 2
Figure 2
Estimated phylogenies of hepatitis C virus genotype 4; Core/E1 phylogenetic analysis based on 340 bp spanning the junction between the Core and E1 regions. Ugandan sequences determined in this study are highlighted in black. Numerical values (presented when >60%) represent the statistical support for the tree topology as determined by 1,000 bootstrap replicates. Reference sequences for genotypes 1–3, 5, and 6 (7) were included in both analyses and retained as the outgroup. Accession numbers are provided in the text.

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