Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA
- PMID: 1712103
- PMCID: PMC51931
- DOI: 10.1073/pnas.88.13.5631
Phylogeny of viroids, viroidlike satellite RNAs, and the viroidlike domain of hepatitis delta virus RNA
Abstract
We report a phylogenetic study of viroids, some plant satellite RNAs, and the viroidlike domain of human hepatitis delta virus RNA. Our results support a monophyletic origin of these RNAs and are consistent with the hypothesis that they may be "living fossils" of a precellular RNA world. Moreover, the viroidlike domain of human hepatitis delta virus RNA appears closely related to the viroidlike satellite RNAs of plants, with which it shares some structural and functional properties. On the basis of our phylogenetic analysis, we propose a taxonomic classification of these RNAs.
Similar articles
-
Rolling-circle replication of viroids, viroid-like satellite RNAs and hepatitis delta virus: variations on a theme.RNA Biol. 2011 Mar-Apr;8(2):200-6. doi: 10.4161/rna.8.2.14238. Epub 2011 Mar 1. RNA Biol. 2011. PMID: 21358283 Review.
-
Subviral pathogens of plants: viroids and viroidlike satellite RNAs.FASEB J. 1991 Oct;5(13):2808-13. doi: 10.1096/fasebj.5.13.1717335. FASEB J. 1991. PMID: 1717335 Review.
-
Testing the extent of sequence similarity among viroids, satellite RNAs, and hepatitis delta virus.J Mol Evol. 2000 Jan;50(1):98-102. doi: 10.1007/s002399910011. J Mol Evol. 2000. PMID: 10654264
-
Prominent polypurine and polypyrimidine tracts in plant viroids and in RNA of the human hepatitis delta agent.Nucleic Acids Res. 1993 Jul 25;21(15):3529-35. doi: 10.1093/nar/21.15.3529. Nucleic Acids Res. 1993. PMID: 7688455 Free PMC article.
-
The viroid and viroid-like RNA database.Nucleic Acids Res. 1999 Jan 1;27(1):186-7. doi: 10.1093/nar/27.1.186. Nucleic Acids Res. 1999. PMID: 9847175 Free PMC article.
Cited by
-
The RNA of both polarities of the peach latent mosaic viroid self-cleaves in vitro solely by single hammerhead structures.Nucleic Acids Res. 1995 Mar 11;23(5):745-52. doi: 10.1093/nar/23.5.745. Nucleic Acids Res. 1995. PMID: 7708488 Free PMC article.
-
Hepatitis viruses exploitation of host DNA methyltransferases functions.Clin Exp Med. 2016 Aug;16(3):265-72. doi: 10.1007/s10238-015-0372-3. Epub 2015 Jul 7. Clin Exp Med. 2016. PMID: 26148656 Review.
-
Viroids: Non-Coding Circular RNAs Able to Autonomously Replicate and Infect Higher Plants.Biology (Basel). 2023 Jan 21;12(2):172. doi: 10.3390/biology12020172. Biology (Basel). 2023. PMID: 36829451 Free PMC article. Review.
-
Reassessing species demarcation criteria in viroid taxonomy by pairwise identity matrices.Virus Evol. 2021 Jan 25;7(1):veab001. doi: 10.1093/ve/veab001. eCollection 2021 Jan. Virus Evol. 2021. PMID: 33623708 Free PMC article.
-
Genomic structure of three phenotypically different isolates of peach latent mosaic viroid: implications of the existence of constraints limiting the heterogeneity of viroid quasispecies.J Virol. 1998 Sep;72(9):7397-406. doi: 10.1128/JVI.72.9.7397-7406.1998. J Virol. 1998. PMID: 9696836 Free PMC article.
References
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources