Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation

New developments in the InterPro database

Nicola J Mulder et al. Nucleic Acids Res. 2007 Jan.

Abstract

InterPro is an integrated resource for protein families, domains and functional sites, which integrates the following protein signature databases: PROSITE, PRINTS, ProDom, Pfam, SMART, TIGRFAMs, PIRSF, SUPERFAMILY, Gene3D and PANTHER. The latter two new member databases have been integrated since the last publication in this journal. There have been several new developments in InterPro, including an additional reading field, new database links, extensions to the web interface and additional match XML files. InterPro has always provided matches to UniProtKB proteins on the website and in the match XML file on the FTP site. Additional matches to proteins in UniParc (UniProt archive) are now available for download in the new match XML files only. The latest InterPro release (13.0) contains more than 13 000 entries, covering over 78% of all proteins in UniProtKB. The database is available for text- and sequence-based searches via a webserver (http://www.ebi.ac.uk/interpro), and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/interpro). The InterProScan search tool is now also available via a web service at http://www.ebi.ac.uk/Tools/webservices/WSInterProScan.html.

PubMed Disclaimer

Similar articles

  • InterPro: the integrative protein signature database.
    Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C. Hunter S, et al. Nucleic Acids Res. 2009 Jan;37(Database issue):D211-5. doi: 10.1093/nar/gkn785. Epub 2008 Oct 21. Nucleic Acids Res. 2009. PMID: 18940856 Free PMC article.
  • InterPro, progress and status in 2005.
    Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bradley P, Bork P, Bucher P, Cerutti L, Copley R, Courcelle E, Das U, Durbin R, Fleischmann W, Gough J, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McDowall J, Mitchell A, Nikolskaya AN, Orchard S, Pagni M, Ponting CP, Quevillon E, Selengut J, Sigrist CJ, Silventoinen V, Studholme DJ, Vaughan R, Wu CH. Mulder NJ, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D201-5. doi: 10.1093/nar/gki106. Nucleic Acids Res. 2005. PMID: 15608177 Free PMC article.
  • The InterPro Database, 2003 brings increased coverage and new features.
    Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM. Mulder NJ, et al. Nucleic Acids Res. 2003 Jan 1;31(1):315-8. doi: 10.1093/nar/gkg046. Nucleic Acids Res. 2003. PMID: 12520011 Free PMC article.
  • The InterPro BioMart: federated query and web service access to the InterPro Resource.
    Jones P, Binns D, McMenamin C, McAnulla C, Hunter S. Jones P, et al. Database (Oxford). 2011 Jul 23;2011:bar033. doi: 10.1093/database/bar033. Print 2011. Database (Oxford). 2011. PMID: 21785143 Free PMC article.
  • In silico characterization of proteins: UniProt, InterPro and Integr8.
    Mulder NJ, Kersey P, Pruess M, Apweiler R. Mulder NJ, et al. Mol Biotechnol. 2008 Feb;38(2):165-77. doi: 10.1007/s12033-007-9003-x. Epub 2007 Oct 4. Mol Biotechnol. 2008. PMID: 18219596 Review.
See all similar articles

Cited by

See all "Cited by" articles

References

    1. Mulder N.J., Apweiler R., Attwood T.K., Bairoch A., Bateman A., Binns D., Bradley P., Bork P., Bucher P., Cerutti L., et al. InterPro, progress and status in 2005. Nucleic Acids Res. 2005;33:D201–D205. - PMC - PubMed
    1. Hulo N., Bairoch A., Bulliard V., Cerutti L., De Castro E., Langendijk-Genevaux P.S., Pagni M., Sigrist C.J.A. The PROSITE database. Nucleic Acids Res. 2006;34:D227–D230. - PMC - PubMed
    1. Attwood T.K., Bradley P., Flower D.R., Gaulton A., Maudling N., Mitchell A.L., Moulton G., Nordle A., Paine K., Taylor P., et al. PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res. 2003;31:400–402. - PMC - PubMed
    1. Bru C., Courcelle E., Carrere S., Beausse Y., Dalmar S., Kahn D. The ProDom database of protein domain families: more emphasis on 3D. Nucleic Acids Res. 2005;33:D212–D215. - PMC - PubMed
    1. Finn R.D., Mistry J., Schuster-Bockler B., Griffiths-Jones S., Hollich V., Lassmann T., Moxon S., Marshall M., Khanna A., Durbin R., et al. Pfam: clans, web tools and services. Nucleic Acids Res. 2006;34:D247–D251. - PMC - PubMed

Publication types