51V NMR chemical shifts calculated from QM/MM models of vanadium chloroperoxidase
- PMID: 17440907
- DOI: 10.1002/chem.200700295
51V NMR chemical shifts calculated from QM/MM models of vanadium chloroperoxidase
Abstract
(51)V NMR chemical shifts calculated from QM/MM-optimized (QM=quantum mechanical; MM=molecular mechanical) models of vanadium-dependent chloroperoxidase (VCPO) are presented. An extensive number of protonation states for the vanadium cofactor (active site of the protein) and a number of probable positional isomers for each of the protonation states are considered. The size of the QM region is increased incrementally to observe the convergence behavior of the (51)V NMR chemical shifts. A total of 40 models are assessed by comparison to experimental solid-state (51)V NMR results recently reported in the literature. Isotropic chemical shifts are found to be a poor indicator of the protonation state; however, anisotropic chemical shifts and the nuclear quadrupole tensors appear to be sensitive to changes in the proton environment of the vanadium nuclei. This detailed investigation of the (51)V NMR chemical shifts computed from QM/MM models provides further evidence that the ground state is either a triply protonated (one axial water and one equatorial hydroxyl group) or a doubly protonated vanadate moiety in VCPO. Particular attention is given to the electrostatic and geometric effects of the protein environment. This is the first study to compute anisotropic NMR chemical shifts from QM/MM models of an active metalloprotein for direct comparison with solid-state MAS NMR data. This theoretical approach enhances the potential use of experimental solid-state NMR spectroscopy for the structural determination of metalloproteins.
Similar articles
-
51V NMR chemical shifts from quantum-mechanical/molecular-mechanical models of vanadium bromoperoxidase.J Phys Chem B. 2008 May 8;112(18):5813-23. doi: 10.1021/jp800580n. Epub 2008 Apr 16. J Phys Chem B. 2008. PMID: 18412416
-
51V NMR chemical shifts calculated from QM/MM models of peroxo forms of vanadium haloperoxidases.J Phys Chem B. 2009 Apr 2;113(13):4456-65. doi: 10.1021/jp8109308. J Phys Chem B. 2009. PMID: 19320526
-
QM/MM investigation of structure and spectroscopic properties of a vanadium-containing peroxidase.J Inorg Biochem. 2008 Aug;102(8):1684-90. doi: 10.1016/j.jinorgbio.2008.04.006. Epub 2008 Apr 26. J Inorg Biochem. 2008. PMID: 18538850
-
Structural and functional comparisons between vanadium haloperoxidase and acid phosphatase enzymes.J Mol Recognit. 2002 Sep-Oct;15(5):291-6. doi: 10.1002/jmr.590. J Mol Recognit. 2002. PMID: 12447906 Review.
-
Solid-state NMR spectroscopy of the quadrupolar halogens: chlorine-35/37, bromine-79/81, and iodine-127.Magn Reson Chem. 2006 Apr;44(4):409-50. doi: 10.1002/mrc.1741. Magn Reson Chem. 2006. PMID: 16425199 Review.
Cited by
-
Insights into enzymatic halogenation from computational studies.Front Chem. 2014 Nov 11;2:98. doi: 10.3389/fchem.2014.00098. eCollection 2014. Front Chem. 2014. PMID: 25426489 Free PMC article. Review.
-
(51)V solid-state NMR and density functional theory studies of eight-coordinate non-oxo vanadium complexes: oxidized amavadin.Dalton Trans. 2009 May 7;(17):3262-9. doi: 10.1039/b820383k. Epub 2009 Mar 13. Dalton Trans. 2009. PMID: 19421628 Free PMC article.
-
Unsaturated trinuclear iron fluoroborylene complexes.J Mol Model. 2017 Apr;23(4):123. doi: 10.1007/s00894-017-3301-4. Epub 2017 Mar 17. J Mol Model. 2017. PMID: 28315080
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources