Singular solutions of the diffusion equation of population genetics
- PMID: 17532344
- DOI: 10.1016/j.jtbi.2007.04.016
Singular solutions of the diffusion equation of population genetics
Abstract
The forward diffusion equation for gene frequency dynamics is solved subject to the condition that the total probability is conserved at all times. This can lead to solutions developing singular spikes (Dirac delta functions) at the gene frequencies 0 and 1. When such spikes appear in solutions they signal gene loss or gene fixation, with the "weight" associated with the spikes corresponding to the probability of loss or fixation. The forward diffusion equation is thus solved for all gene frequencies, namely the absorbing frequencies of 0 and 1 along with the continuous range of gene frequencies on the interval (0,1) that excludes the frequencies of 0 and 1. Previously, the probabilities of the absorbing frequencies of 0 and 1 were found by appeal to the backward diffusion equation, while those in the continuous range (0,1) were found from the forward diffusion equation. Our unified approach does not require two separate equations for a complete dynamical treatment of all gene frequencies within a diffusion approximation framework. For cases involving mutation, migration and selection, it is shown that a property of the deterministic part of gene frequency dynamics determines when fixation and loss can occur. It is also shown how solution of the forward equation, at long times, leads to the standard result for the fixation probability.
Similar articles
-
Exact solution of the multi-allelic diffusion model.Math Biosci. 2007 Sep;209(1):124-70. doi: 10.1016/j.mbs.2007.01.001. Epub 2007 Jan 12. Math Biosci. 2007. PMID: 17320915
-
Fixation probability for a beneficial allele and a mutant strategy in a linear game under weak selection in a finite island model.Theor Popul Biol. 2007 Nov;72(3):409-25. doi: 10.1016/j.tpb.2007.04.001. Epub 2007 Apr 13. Theor Popul Biol. 2007. PMID: 17531280
-
Alternative to the diffusion equation in population genetics.Phys Rev E Stat Nonlin Soft Matter Phys. 2010 Nov;82(5 Pt 1):051913. doi: 10.1103/PhysRevE.82.051913. Epub 2010 Nov 9. Phys Rev E Stat Nonlin Soft Matter Phys. 2010. PMID: 21230506
-
Long-term stability from fixation probabilities in finite populations: new perspectives for ESS theory.Theor Popul Biol. 2005 Jul;68(1):19-27. doi: 10.1016/j.tpb.2005.04.001. Theor Popul Biol. 2005. PMID: 16023912 Review.
-
Climbing mount probable: mutation as a cause of nonrandomness in evolution.J Hered. 2009 Sep-Oct;100(5):637-47. doi: 10.1093/jhered/esp048. Epub 2009 Jul 22. J Hered. 2009. PMID: 19625453 Review.
Cited by
-
AD-LIBS: inferring ancestry across hybrid genomes using low-coverage sequence data.BMC Bioinformatics. 2017 Apr 4;18(1):203. doi: 10.1186/s12859-017-1613-0. BMC Bioinformatics. 2017. PMID: 28376731 Free PMC article.
-
Population growth enhances the mean fixation time of neutral mutations and the persistence of neutral variation.Genetics. 2012 Jun;191(2):561-77. doi: 10.1534/genetics.112.139220. Epub 2012 Mar 16. Genetics. 2012. PMID: 22426878 Free PMC article.
-
The frequency-dependent Wright-Fisher model: diffusive and non-diffusive approximations.J Math Biol. 2014 Apr;68(5):1089-133. doi: 10.1007/s00285-013-0657-7. Epub 2013 Mar 16. J Math Biol. 2014. PMID: 23503810
-
Quantifying evolutionary dynamics from variant-frequency time series.Sci Rep. 2016 Sep 12;6:32497. doi: 10.1038/srep32497. Sci Rep. 2016. PMID: 27616332 Free PMC article.
-
Fixation in large populations: a continuous view of a discrete problem.J Math Biol. 2016 Jan;72(1-2):283-330. doi: 10.1007/s00285-015-0889-9. Epub 2015 Apr 28. J Math Biol. 2016. PMID: 25917604
MeSH terms
LinkOut - more resources
Full Text Sources