Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana
- PMID: 17565183
- PMCID: PMC2335013
- DOI: 10.1107/S1744309107016004
Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana
Abstract
The deoxyuridine triphosphate nucleotidohydrolase gene from Arabidopsis thaliana was expressed and the gene product was purified. Crystallization was performed by the hanging-drop vapour-diffusion method at 298 K using 2 M ammonium sulfate as the precipitant. X-ray diffraction data were collected to 2.2 A resolution using Cu K alpha radiation. The crystal belongs to the orthorhombic space group P2(1)2(1)2(1), with unit-cell parameters a = 69.90, b = 70.86 A, c = 75.55 A. Assuming the presence of a trimer in the asymmetric unit, the solvent content was 30%, with a V(M) of 1.8 A3 Da(-1).
Figures
Similar articles
-
Crystallization and preliminary X-ray crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Saccharomyces cerevisiae.Acta Crystallogr D Biol Crystallogr. 2001 Aug;57(Pt 8):1147-9. doi: 10.1107/s0907444901007909. Epub 2001 Jul 23. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11468401
-
Crystallization and preliminary crystallographic analysis of deoxyuridine 5'-triphosphate nucleotidohydrolase from Bacillus subtilis.Acta Crystallogr D Biol Crystallogr. 2001 Jun;57(Pt 6):876-8. doi: 10.1107/s0907444901007727. Epub 2001 May 25. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11375514
-
Purification, crystallization and preliminary X-ray diffraction of anthocyanidin synthase from Arabidopsis thaliana.Acta Crystallogr D Biol Crystallogr. 2001 Mar;57(Pt 3):425-7. doi: 10.1107/s0907444900019818. Acta Crystallogr D Biol Crystallogr. 2001. PMID: 11223521
-
Crystallization and preliminary X-ray diffraction analysis of rat autotaxin.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1127-9. doi: 10.1107/S1744309110030228. Epub 2010 Aug 31. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010. PMID: 20823544 Free PMC article.
-
Cloning, purification, crystallization and preliminary X-ray analysis of the receiver domain of the histidine kinase CKI1 from Arabidopsis thaliana.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 May 1;65(Pt 5):478-81. doi: 10.1107/S1744309109012032. Epub 2009 Apr 24. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009. PMID: 19407381 Free PMC article.
Cited by
-
dUTP pyrophosphatases from hyperthermophilic eubacterium and archaeon: Structural and functional examinations on the suitability for PCR application.Protein Sci. 2024 Nov;33(11):e5185. doi: 10.1002/pro.5185. Protein Sci. 2024. PMID: 39440877
-
Crystallization of Chlorella deoxyuridine triphosphatase.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Dec 1;67(Pt 12):1599-602. doi: 10.1107/S1744309111038097. Epub 2011 Nov 26. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011. PMID: 22139176 Free PMC article.
-
Deer mouse hemoglobin exhibits a lowered oxygen affinity owing to mobility of the E helix.Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Apr 1;69(Pt 4):393-8. doi: 10.1107/S1744309113005708. Epub 2013 Mar 28. Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013. PMID: 23545644 Free PMC article.
-
The flexible motif V of Epstein-Barr virus deoxyuridine 5'-triphosphate pyrophosphatase is essential for catalysis.J Biol Chem. 2009 Sep 11;284(37):25280-9. doi: 10.1074/jbc.M109.019315. Epub 2009 Jul 7. J Biol Chem. 2009. PMID: 19586911 Free PMC article.
-
Enzyme kinetics of deoxyuridine triphosphatase from Western corn rootworm.BMC Res Notes. 2023 Nov 16;16(1):336. doi: 10.1186/s13104-023-06618-2. BMC Res Notes. 2023. PMID: 37974243 Free PMC article.
References
-
- Cedergren-Zeppezauer, E. S., Larsson, G., Nyman, P. O., Dauter, Z. & Wilson, K. S. (1992). Nature (London), 355, 740–743. - PubMed
-
- Chan, S., Segelke, B., Lekin, T., Krupka, H., Cho, U. S., Kim, M.-Y., So, M., Kim, C.-Y., Naranjo, C. M., Rogers, Y. C., Park, M. S., Waldo, G. S., Pashkov, I., Cascio, D., Perry, J. L. & Sawaya, M. R. (2004). J. Mol. Biol.341, 503–517. - PubMed
-
- Collaborative Computational Project, Number 4 (1994). Acta Cryst. D50, 760–763. - PubMed
-
- Dauter, Z., Persson, R., Rosengren, A. M., Nyman, P. O., Wilson, K. S. & Cedergren-Zeppezauer, E. S. (1999). J. Mol. Biol.285, 655–673. - PubMed
-
- Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126–2132. - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases