Principles of optimal metabolic network operation
- PMID: 17625514
- PMCID: PMC1949038
- DOI: 10.1038/msb4100169
Principles of optimal metabolic network operation
Comment on
-
Systematic evaluation of objective functions for predicting intracellular fluxes in Escherichia coli.Mol Syst Biol. 2007;3:119. doi: 10.1038/msb4100162. Epub 2007 Jul 10. Mol Syst Biol. 2007. PMID: 17625511 Free PMC article.
Similar articles
-
Metabolic approaches to treatment of melanoma.Clin Cancer Res. 2009 Nov 1;15(21):6490-4. doi: 10.1158/1078-0432.CCR-09-0251. Epub 2009 Oct 27. Clin Cancer Res. 2009. PMID: 19861452 Review.
-
Network Analysis Tools: from biological networks to clusters and pathways.Nat Protoc. 2008;3(10):1616-29. doi: 10.1038/nprot.2008.100. Nat Protoc. 2008. PMID: 18802442
-
An environmental perspective on metabolism.J Theor Biol. 2008 Jun 7;252(3):530-7. doi: 10.1016/j.jtbi.2007.10.036. Epub 2007 Nov 4. J Theor Biol. 2008. PMID: 18086477
-
Impact of genome reduction on bacterial metabolism and its regulation.Science. 2009 Nov 27;326(5957):1263-8. doi: 10.1126/science.1177263. Science. 2009. PMID: 19965476
-
Network reconstruction based on steady-state data.Essays Biochem. 2008;45:161-76. doi: 10.1042/BSE0450161. Essays Biochem. 2008. PMID: 18793131 Review.
Cited by
-
Using optimal control to understand complex metabolic pathways.BMC Bioinformatics. 2020 Oct 21;21(1):472. doi: 10.1186/s12859-020-03808-8. BMC Bioinformatics. 2020. PMID: 33087041 Free PMC article.
-
On the accessibility of adaptive phenotypes of a bacterial metabolic network.PLoS Comput Biol. 2009 Aug;5(8):e1000472. doi: 10.1371/journal.pcbi.1000472. Epub 2009 Aug 21. PLoS Comput Biol. 2009. PMID: 19696877 Free PMC article.
-
Multi-criteria optimization of regulation in metabolic networks.PLoS One. 2012;7(7):e41122. doi: 10.1371/journal.pone.0041122. Epub 2012 Jul 26. PLoS One. 2012. PMID: 22848435 Free PMC article.
-
Machine learning identifies key metabolic reactions in bacterial growth on different carbon sources.Mol Syst Biol. 2024 Mar;20(3):170-186. doi: 10.1038/s44320-024-00017-w. Epub 2024 Jan 30. Mol Syst Biol. 2024. PMID: 38291231 Free PMC article.
-
Optimization in computational systems biology.BMC Syst Biol. 2008 May 28;2:47. doi: 10.1186/1752-0509-2-47. BMC Syst Biol. 2008. PMID: 18507829 Free PMC article. Review.
References
-
- Bro C, Regenberg B, Forster J, Nielsen J (2006) In silico aided metabolic engineering of Saccharomyces cerevisiae for improved bioethanol production. Metab Eng 8: 102–111 - PubMed
-
- Edwards JS, Ibarra RU, Palsson BO (2001) In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data. Nat Biotechnol 19: 125–130 - PubMed
-
- Fischer E, Sauer U (2005) Large-scale in vivo flux analysis shows rigidity and suboptimal performance of Bacillus subtilis metabolism. Nat Genet 37: 636–640 - PubMed
-
- Ibarra RU, Edwards JS, Palsson BO (2002) Escherichia coli K-12 undergoes adaptive evolution to achieve in silico predicted optimal growth. Nature 420: 186–189 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources