Review
doi: 10.1007/978-1-59745-390-5_8.
Comparing microarray studies
Affiliations
- PMID: 17634614
- DOI: 10.1007/978-1-59745-390-5_8
Item in Clipboard
Review
Comparing microarray studies
Methods Mol Biol.
2007.
Abstract
We present a practical guide to some of the issues involved in comparing or integrating different microarray studies. We discuss the influence that various factors have on the agreement between studies, such as different technologies and platforms, statistical analysis criteria, protocols, and lab variability. We discuss methods to carry out or refine such comparisons, and detail several common pitfalls to avoid. Finally, we illustrate these ideas with an example case.
Similar articles
-
Some statistical issues in microarray gene expression data.Radiat Res. 2006 Jun;165(6):745-8. doi: 10.1667/RR3576.1. Radiat Res. 2006. PMID: 16802876
-
Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton.BMC Genomics. 2007 Aug 29;8:294. doi: 10.1186/1471-2164-8-294. BMC Genomics. 2007. PMID: 17727702 Free PMC article.
-
Gene discovery in neuropharmacological and behavioral studies using Affymetrix microarray data.Methods. 2005 Nov;37(3):219-28. doi: 10.1016/j.ymeth.2005.09.002. Methods. 2005. PMID: 16308151 Review.
-
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basis.BMC Bioinformatics. 2006 Nov 22;7:511. doi: 10.1186/1471-2105-7-511. BMC Bioinformatics. 2006. PMID: 17118209 Free PMC article.
-
Improving reliability and performance of DNA microarrays.Expert Rev Mol Diagn. 2006 May;6(3):481-92. doi: 10.1586/14737159.6.3.481. Expert Rev Mol Diagn. 2006. PMID: 16706748 Review.
Cited by
-
Pluripotency genes overexpressed in primate embryonic stem cells are localized on homologues of human chromosomes 16, 17, 19, and X.Stem Cell Res. 2010 Jan;4(1):25-37. doi: 10.1016/j.scr.2009.09.003. Epub 2009 Sep 17. Stem Cell Res. 2010. PMID: 19854689 Free PMC article.
-
Evaluation of the psoriasis transcriptome across different studies by gene set enrichment analysis (GSEA).PLoS One. 2010 Apr 20;5(4):e10247. doi: 10.1371/journal.pone.0010247. PLoS One. 2010. PMID: 20422035 Free PMC article.
-
In praise of arrays.Pediatr Nephrol. 2009 Sep;24(9):1643-59; quiz 1655, 1659. doi: 10.1007/s00467-008-0808-z. Epub 2008 Jun 21. Pediatr Nephrol. 2009. PMID: 18568367 Free PMC article. Review.
-
Advances and Trends in Omics Technology Development.Front Med (Lausanne). 2022 Jul 1;9:911861. doi: 10.3389/fmed.2022.911861. eCollection 2022. Front Med (Lausanne). 2022. PMID: 35860739 Free PMC article. Review.
-
Genes and gene expression modules associated with caloric restriction and aging in the laboratory mouse.BMC Genomics. 2009 Dec 7;10:585. doi: 10.1186/1471-2164-10-585. BMC Genomics. 2009. PMID: 19968875 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous
