From response to stimulus: adaptive sampling in sensory physiology
- PMID: 17689952
- DOI: 10.1016/j.conb.2007.07.009
From response to stimulus: adaptive sampling in sensory physiology
Abstract
Sensory systems extract behaviorally relevant information from a continuous stream of complex high-dimensional input signals. Understanding the detailed dynamics and precise neural code, even of a single neuron, is therefore a non-trivial task. Automated closed-loop approaches that integrate data analysis in the experimental design ease the investigation of sensory systems in three directions: First, adaptive sampling speeds up the data acquisition and thus increases the yield of an experiment. Second, model-driven stimulus exploration improves the quality of experimental data needed to discriminate between alternative hypotheses. Third, information-theoretic data analyses open up novel ways to search for those stimuli that are most efficient in driving a given neuron in terms of its firing rate or coding quality. Examples from different sensory systems show that, in all three directions, substantial progress can be achieved once rapid online data analysis, adaptive sampling, and computational modeling are tightly integrated into experiments.
Similar articles
-
Predictive coding and the slowness principle: an information-theoretic approach.Neural Comput. 2008 Apr;20(4):1026-41. doi: 10.1162/neco.2008.01-07-455. Neural Comput. 2008. PMID: 18085988
-
Sparse coding of sensory inputs.Curr Opin Neurobiol. 2004 Aug;14(4):481-7. doi: 10.1016/j.conb.2004.07.007. Curr Opin Neurobiol. 2004. PMID: 15321069 Review.
-
Classification of stimuli based on stimulus-response curves and their variability.Brain Res. 2008 Aug 15;1225:57-66. doi: 10.1016/j.brainres.2008.04.058. Epub 2008 Apr 30. Brain Res. 2008. PMID: 18538308
-
Analysis of neural coding through quantization with an information-based distortion measure.Network. 2003 Feb;14(1):151-76. Network. 2003. PMID: 12613556
-
Quantifying stimulus discriminability: a comparison of information theory and ideal observer analysis.Neural Comput. 2005 Apr;17(4):741-78. doi: 10.1162/0899766053429435. Neural Comput. 2005. PMID: 15829089 Review.
Cited by
-
Broadband visual stimuli improve neuronal representation and sensory perception.Nat Commun. 2025 Mar 26;16(1):2957. doi: 10.1038/s41467-025-58003-1. Nat Commun. 2025. PMID: 40140355 Free PMC article.
-
Automating the design of informative sequences of sensory stimuli.J Comput Neurosci. 2011 Feb;30(1):181-200. doi: 10.1007/s10827-010-0248-1. Epub 2010 Jun 16. J Comput Neurosci. 2011. PMID: 20556641 Free PMC article.
-
Information and efficiency in the nervous system--a synthesis.PLoS Comput Biol. 2013;9(7):e1003157. doi: 10.1371/journal.pcbi.1003157. Epub 2013 Jul 25. PLoS Comput Biol. 2013. PMID: 23935475 Free PMC article. Review.
-
A spike sorting toolbox for up to thousands of electrodes validated with ground truth recordings in vitro and in vivo.Elife. 2018 Mar 20;7:e34518. doi: 10.7554/eLife.34518. Elife. 2018. PMID: 29557782 Free PMC article.
-
Adaptive stimulus optimization for sensory systems neuroscience.Front Neural Circuits. 2013 Jun 6;7:101. doi: 10.3389/fncir.2013.00101. eCollection 2013. Front Neural Circuits. 2013. PMID: 23761737 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Other Literature Sources