Ancestral animal genomes reconstruction
- PMID: 17702562
- DOI: 10.1016/j.coi.2007.06.009
Ancestral animal genomes reconstruction
Abstract
Reconstructing the evolutionary history of all species is an essential objective for evolutionary biologists. Much effort has been devoted to ancestral genome reconstruction. Numbered genome sequencing of current and extinct organisms enables evolutionary biologists to compare genomic data and reconstruct ancestral genomes. Long-term conservation of karyotype, gene order or gene sequence are clues to the heritage of each species and these data can be used by evolutionary biologists to synthesize distant ancestral genomes. In this review, we referred to the recent advances in ancestral genomes reconstruction and the insight it gives on genome evolution. Special attention is devoted to the use of this knowledge to understand the evolution of the immune system genes.
Similar articles
-
Reconstructing the history of large-scale genomic changes: biological questions and computational challenges.J Comput Biol. 2011 Jul;18(7):879-93. doi: 10.1089/cmb.2010.0189. Epub 2011 May 12. J Comput Biol. 2011. PMID: 21563973 Review.
-
Inferring ancestral gene order.Methods Mol Biol. 2008;452:365-83. doi: 10.1007/978-1-60327-159-2_17. Methods Mol Biol. 2008. PMID: 18566773 Review.
-
Reconstruction of the vertebrate ancestral genome reveals dynamic genome reorganization in early vertebrates.Genome Res. 2007 Sep;17(9):1254-65. doi: 10.1101/gr.6316407. Epub 2007 Jul 25. Genome Res. 2007. PMID: 17652425 Free PMC article.
-
Ancestral state reconstructions for genomes.Curr Opin Genet Dev. 2005 Dec;15(6):595-600. doi: 10.1016/j.gde.2005.09.011. Epub 2005 Oct 7. Curr Opin Genet Dev. 2005. PMID: 16216489 Review.
-
Alignments of mitochondrial genome arrangements: applications to metazoan phylogeny.J Theor Biol. 2006 Jun 21;240(4):511-20. doi: 10.1016/j.jtbi.2005.10.010. Epub 2005 Dec 1. J Theor Biol. 2006. PMID: 16325206
Cited by
-
Reconstruction of monocotelydoneous proto-chromosomes reveals faster evolution in plants than in animals.Proc Natl Acad Sci U S A. 2009 Sep 1;106(35):14908-13. doi: 10.1073/pnas.0902350106. Epub 2009 Aug 13. Proc Natl Acad Sci U S A. 2009. PMID: 19706486 Free PMC article.
-
On the reconstruction of the ancestral bacterial genomes in genus Mycobacterium and Brucella.BMC Syst Biol. 2018 Nov 20;12(Suppl 5):100. doi: 10.1186/s12918-018-0618-2. BMC Syst Biol. 2018. PMID: 30458842 Free PMC article.
-
Strategies for reliable exploitation of evolutionary concepts in high throughput biology.Evol Bioinform Online. 2008 May 8;4:121-37. doi: 10.4137/ebo.s597. Evol Bioinform Online. 2008. PMID: 19204813 Free PMC article.
-
Homoplastic microinversions and the avian tree of life.BMC Evol Biol. 2011 May 25;11:141. doi: 10.1186/1471-2148-11-141. BMC Evol Biol. 2011. PMID: 21612607 Free PMC article.
-
Strong functional patterns in the evolution of eukaryotic genomes revealed by the reconstruction of ancestral protein domain repertoires.Genome Biol. 2011;12(1):R4. doi: 10.1186/gb-2011-12-1-r4. Epub 2011 Jan 17. Genome Biol. 2011. PMID: 21241503 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources