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. 2007 Jul 5:1:19.
doi: 10.1186/1752-153X-1-19.

Chemical accuracy in QM/MM calculations on enzyme-catalysed reactions

Affiliations

Chemical accuracy in QM/MM calculations on enzyme-catalysed reactions

Adrian J Mulholland. Chem Cent J. .

Abstract

Combined quantum mechanics/molecular mechanics (QM/MM) modelling has the potential to answer fundamental questions about enzyme mechanisms and catalysis. Calculations using QM/MM methods can now predict barriers for enzyme-catalysed reactions with unprecedented, near chemical accuracy, i.e. to within 1 kcal/mol in the best cases. Quantitative predictions from first-principles calculations were only previously possible for very small molecules. At this level, quantitative, reliable predictions can be made about the mechanisms of enzyme-catalysed reactions. This development signals a new era of computational biochemistry.

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References

    1. Mulholland AJ. Modelling enzyme reaction mechanisms, specificity and catalysis. Drug Discovery Today. 2005;10:1393–1402. doi: 10.1016/S1359-6446(05)03611-1. - DOI - PubMed
    1. Garcia-Viloca M, Gao J, Karplus M, Truhlar DG. How enzymes work: Analysis by modern rate theory and computer simulations. Science. 2004;303:186–195. doi: 10.1126/science.1088172. - DOI - PubMed
    1. Warshel A. Computer simulations of enzyme catalysis: Methods, progress, and insights. Annu Rev Biophys Biomol Struct. 2003;32:425–443. doi: 10.1146/annurev.biophys.32.110601.141807. - DOI - PubMed
    1. Martí S, Roca M, Andrés J, Moliner V, Silla E, Tuñón I, Bertrán J. Theoretical insights in enzyme catalysis. Chem Soc Rev. 2004;33:98–107. doi: 10.1039/b301875j. - DOI - PubMed
    1. Claeyssens F, Harvey JN, Manby FR, Mata RA, Mulholland AJ, Ranaghan KE, Schütz M, Thiel S, Thiel W, Werner H-J. High Accuracy Computation of Reaction Barriers in Enzymes. Angewandte Chemie Intl Edn. 2006;45:6856–6859. doi: 10.1002/anie.200602711. - DOI - PubMed

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