Role of Tyr residues on the protein surface of cationic cell-wall-peroxidase (CWPO-C) from poplar: potential oxidation sites for oxidative polymerization of lignin
- PMID: 17910963
- DOI: 10.1016/j.phytochem.2007.08.020
Role of Tyr residues on the protein surface of cationic cell-wall-peroxidase (CWPO-C) from poplar: potential oxidation sites for oxidative polymerization of lignin
Abstract
It was previously reported that an unique peroxidase isoenzyme, cationic cell-wall-bound peroxidase (CWPO-C), from poplar callus oxidizes sinapyl alcohol, ferrocytochrome c and synthetic lignin polymers, unlike other plant peroxidases. Here, the catalytic mechanism of CWPO-C was investigated using chemical modification and homology modeling. The simulated CWPO-C structure predicts that the entrance to the heme pocket of CWPO-C is the same size as those of other plant peroxidases, suggesting that ferrocytochrome c and synthetic lignin polymers cannot interact with the heme of CWPO-C. Since Trp and Tyr residues are redox-active, such residues located on the protein surface were predicted to be active sites for CWPO-C. Modification of CWPO-C Trp residues did not suppress its oxidation activities toward guaiacol and syringaldazine. On the other hand, modification of CWPO-C Tyr residues using tetranitromethane strongly suppressed its oxidation activities toward syringaldazine and 2,6-dimethoxyphenol by 90%, respectively, and also suppressed its guaiacol oxidation activity to a lesser extent. Ferrocytochrome c was not oxidized by Tyr-modified CWPO-C. These results indicate that the Tyr residues in CWPO-C mediate its oxidation of syringyl compounds and high-molecular-weight substrates. Homology modeling indicates that Tyr-177 and Tyr-74 are located near the heme and exposed on the protein surface of CWPO-C. These results suggest that Tyr residues on the protein surface are considered to be important for the oxidation activities of CWPO-C with a wide range of substrates, and potentially unique oxidation sites for the plant peroxidase family.
Similar articles
-
Identification of Tyr74 and Tyr177 as substrate oxidation sites in cationic cell wall-bound peroxidase from Populus alba L.FEBS J. 2012 Jan;279(2):348-57. doi: 10.1111/j.1742-4658.2011.08429.x. Epub 2011 Dec 9. FEBS J. 2012. PMID: 22099451
-
Lignin dehydrogenative polymerization mechanism: a poplar cell wall peroxidase directly oxidizes polymer lignin and produces in vitro dehydrogenative polymer rich in beta-O-4 linkage.FEBS Lett. 2004 Mar 26;562(1-3):197-201. doi: 10.1016/S0014-5793(04)00224-8. FEBS Lett. 2004. PMID: 15044025
-
The cationic cell-wall-peroxidase having oxidation ability for polymeric substrate participates in the late stage of lignification of Populus alba L.Plant Mol Biol. 2006 Dec;62(6):797-807. doi: 10.1007/s11103-006-9057-3. Epub 2006 Sep 27. Plant Mol Biol. 2006. PMID: 17004015
-
Structure and action mechanism of ligninolytic enzymes.Appl Biochem Biotechnol. 2009 May;157(2):174-209. doi: 10.1007/s12010-008-8279-z. Epub 2008 Jun 26. Appl Biochem Biotechnol. 2009. PMID: 18581264 Review.
-
[Lignin and ligninase].Bioorg Khim. 1992 Mar;18(3):309-45. Bioorg Khim. 1992. PMID: 1524589 Review. Russian.
Cited by
-
Populus alba cationic cell-wall-bound peroxidase (CWPO-C) regulates the plant growth and affects auxin concentration in Arabidopsis thaliana.Physiol Mol Biol Plants. 2022 Sep;28(9):1671-1680. doi: 10.1007/s12298-022-01241-0. Epub 2022 Oct 30. Physiol Mol Biol Plants. 2022. PMID: 36387972 Free PMC article.
-
Protein radicals in fungal versatile peroxidase: catalytic tryptophan radical in both compound I and compound II and studies on W164Y, W164H, and W164S variants.J Biol Chem. 2009 Mar 20;284(12):7986-94. doi: 10.1074/jbc.M808069200. Epub 2009 Jan 21. J Biol Chem. 2009. PMID: 19158088 Free PMC article.
-
Peroxidases Bound to the Growing Lignin Polymer Produce Natural Like Extracellular Lignin in a Cell Culture of Norway Spruce.Front Plant Sci. 2016 Oct 18;7:1523. doi: 10.3389/fpls.2016.01523. eCollection 2016. Front Plant Sci. 2016. PMID: 27803704 Free PMC article.
-
AspWood: High-Spatial-Resolution Transcriptome Profiles Reveal Uncharacterized Modularity of Wood Formation in Populus tremula.Plant Cell. 2017 Jul;29(7):1585-1604. doi: 10.1105/tpc.17.00153. Epub 2017 Jun 27. Plant Cell. 2017. PMID: 28655750 Free PMC article.
-
Microbial degradation of lignin: how a bulky recalcitrant polymer is efficiently recycled in nature and how we can take advantage of this.Microb Biotechnol. 2009 Mar;2(2):164-77. doi: 10.1111/j.1751-7915.2008.00078.x. Epub 2009 Jan 13. Microb Biotechnol. 2009. PMID: 21261911 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources