Comparison and modification of rRNA sequencing methods
- PMID: 1793573
Comparison and modification of rRNA sequencing methods
Abstract
In this study, modification of two methods of RNA sequencing resulted in more definitive sequencing bands. In one method of sequencing, the bands of lane A and lane G sometimes were not clear. Modifications of this method by changing the concentrations of ddATP and ddGTP resulted in the bands of lane A and lane G becoming more readable. Although a second sequencing method was found to have clearer bands than the first method, and the bases immediately downstream from the primer binding site could be read by using r-32P-labeled primer, the bands on the top of lane A still were not clear. Modifications of this second method by changing the ddATP/dATP ratio resulted in the bands of lane A becoming much clearer.
Similar articles
-
Rapid detection and differentiation of pathogenic Campylobacter jejuni and Campylobacter coli by real-time PCR.Res Microbiol. 2005 Jan-Feb;156(1):107-14. doi: 10.1016/j.resmic.2004.08.008. Res Microbiol. 2005. PMID: 15636755
-
Chronic shedding of Campylobacter species in beef cattle.J Appl Microbiol. 2004;97(2):410-20. doi: 10.1111/j.1365-2672.2004.02313.x. J Appl Microbiol. 2004. PMID: 15239709
-
[16S rRNA gene sequencing for pathogen identification from clinical specimens].Zhonghua Yi Xue Za Zhi. 2008 Jan 8;88(2):123-6. Zhonghua Yi Xue Za Zhi. 2008. PMID: 18353221 Chinese.
-
Inter- and intra-genomic heterogeneity of the intervening sequence in the 23S ribosomal RNA gene of Campylobacter jejuni and Campylobacter coli.Syst Appl Microbiol. 2009 Apr;32(2):91-100. doi: 10.1016/j.syapm.2008.12.004. Epub 2009 Feb 6. Syst Appl Microbiol. 2009. PMID: 19201124
-
Confidence intervals of similarity values determined for cloned SSU rRNA genes from environmental samples.J Microbiol Methods. 2006 Apr;65(1):144-52. doi: 10.1016/j.mimet.2005.07.001. Epub 2005 Aug 3. J Microbiol Methods. 2006. PMID: 16083982
Cited by
-
Development of a 16S rRNA-based oligomer probe specific for Listeria monocytogenes.Appl Environ Microbiol. 1991 Dec;57(12):3666-70. doi: 10.1128/aem.57.12.3666-3670.1991. Appl Environ Microbiol. 1991. PMID: 1723868 Free PMC article.