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. 2008 Jan;36(Database issue):D22-4.
doi: 10.1093/nar/gkm889. Epub 2007 Oct 25.

DDBJ with new system and face

H Sugawara  1 , O Ogasawara, K Okubo, T Gojobori, Y Tateno
Affiliations

DDBJ with new system and face

H Sugawara et al. Nucleic Acids Res. 2008 Jan.

Abstract

DDBJ (http://www.ddbj.nig.ac.jp) collected and released 1 880 115 entries or 1 134 086 245 bases in the period from July 2006 to June 2007. The released data contains the high-throughput cDNAs of cricket and high-quality draft genome of medaka among others. Our computer system has been upgraded since March 2007. Another new aspect is an efficient data retrieval tool that has recently been equipped and served at DDBJ. It is called All-round Retrieval for Sequence and Annotation, which enables the user to search for keywords also in the Feature/Qualifier of the International Nucleotide Sequence Database Collaboration (http://www.insdc.org/). We will also replace our home page with a more efficient one by the end of 2007.

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Figures

Figure 1.
Figure 1.
Example of keyword search by ARSA. Keywords used are ‘source’ (Feature), ‘chromosome’ (Qualifier belonging to ‘source’) and CDS (Feature). ‘Chromosome’ has a value attribute to which ‘Y’ is given for specifying chromosome Y.
See this image and copyright information in PMC

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