Getting started in tiling microarray analysis
- PMID: 17967045
- PMCID: PMC2041964
- DOI: 10.1371/journal.pcbi.0030183
Getting started in tiling microarray analysis
Conflict of interest statement
Similar articles
-
Microarray image segmentation using Chan-Vese active contour model and level set method.Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:3629-32. doi: 10.1109/IEMBS.2009.5333761. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19964310
-
Microarray data analysis: from disarray to consolidation and consensus.Nat Rev Genet. 2006 Jan;7(1):55-65. doi: 10.1038/nrg1749. Nat Rev Genet. 2006. PMID: 16369572 Review.
-
How noisy and replicable are DNA microarry data?Int J Bioinform Res Appl. 2005;1(1):31-50. doi: 10.1504/IJBRA.2005.006901. Int J Bioinform Res Appl. 2005. PMID: 18048120
-
Making the most of microarray data.Nat Genet. 2000 Mar;24(3):204-6. doi: 10.1038/73392. Nat Genet. 2000. PMID: 10700163 No abstract available.
-
DNA microarray technology for the microbiologist: an overview.Appl Microbiol Biotechnol. 2006 Nov;73(2):255-73. doi: 10.1007/s00253-006-0584-2. Epub 2006 Oct 17. Appl Microbiol Biotechnol. 2006. PMID: 17043830 Review.
Cited by
-
Identification and Characterization of Transcripts Regulated by Circadian Alternative Polyadenylation in Mouse Liver.G3 (Bethesda). 2018 Nov 6;8(11):3539-3548. doi: 10.1534/g3.118.200559. G3 (Bethesda). 2018. PMID: 30181259 Free PMC article.
-
Analysis of DNA strand-specific differential expression with high density tiling microarrays.BMC Bioinformatics. 2010 Mar 17;11:136. doi: 10.1186/1471-2105-11-136. BMC Bioinformatics. 2010. PMID: 20233458 Free PMC article.
-
Genome-wide approaches to studying chromatin modifications.Nat Rev Genet. 2008 Mar;9(3):179-91. doi: 10.1038/nrg2270. Nat Rev Genet. 2008. PMID: 18250624 Free PMC article. Review.
-
Web-based analysis of (Epi-) genome data using EpiGRAPH and Galaxy.Methods Mol Biol. 2010;628:275-96. doi: 10.1007/978-1-60327-367-1_15. Methods Mol Biol. 2010. PMID: 20238087 Free PMC article.
-
chipD: a web tool to design oligonucleotide probes for high-density tiling arrays.Nucleic Acids Res. 2010 Jul;38(Web Server issue):W321-5. doi: 10.1093/nar/gkq517. Epub 2010 Jun 6. Nucleic Acids Res. 2010. PMID: 20529880 Free PMC article.
References
-
- Bernstein BE, Humphrey EL, Liu CL, Schreiber SL. The use of chromatin immunoprecipitation assays in genome-wide analyses of histone modifications. Methods Enzymol. 2004;376:349–360. - PubMed
-
- Hanlon SE, Lieb JD. Progress and challenges in profiling the dynamics of chromatin and transcription factor binding with DNA microarrays. Curr Opin Genet Dev. 2004;14:697–705. - PubMed
-
- Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, et al. Genome-wide analysis of estrogen receptor binding sites. Nat Genet. 2006;38:1289–1297. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources