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. 2008 May 15;24(10):1321-2.
doi: 10.1093/bioinformatics/btn122. Epub 2008 Apr 4.

UniProtJAPI: a remote API for accessing UniProt data

Samuel Patient  1 , Daniela Wieser, Michael Kleen, Ernst Kretschmann, Maria Jesus Martin, Rolf Apweiler
Affiliations

UniProtJAPI: a remote API for accessing UniProt data

Samuel Patient et al. Bioinformatics. .

Abstract

Programmatic access to the UniProt Knowledgebase (UniProtKB) is essential for many bioinformatics applications dealing with protein data. We have created a Java library named UniProtJAPI, which facilitates the integration of UniProt data into Java-based software applications. The library supports queries and similarity searches that return UniProtKB entries in the form of Java objects. These objects contain functional annotations or sequence information associated with a UniProt entry. Here, we briefly describe the UniProtJAPI and demonstrate its usage.

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