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. 2008 Jun 15;24(12):1467-8.
doi: 10.1093/bioinformatics/btn213. Epub 2008 Apr 29.

jSquid: a Java applet for graphical on-line network exploration

Martin Klammer  1 , Sanjit Roopra, Erik L L Sonnhammer
Affiliations

jSquid: a Java applet for graphical on-line network exploration

Martin Klammer et al. Bioinformatics. .

Abstract

jSquid is a graph visualization tool for exploring graphs from protein-protein interaction or functional coupling networks. The tool was designed for the FunCoup web site, but can be used for any similar network exploring purpose. The program offers various visualization and graph manipulation techniques to increase the utility for the user.

Availability: jSquid is available for direct usage and download at http://jSquid.sbc.su.se including source code under the GPLv3 license, and input examples. It requires Java version 5 or higher to run properly.

Contact: erik.sonnhammer@sbc.su.se

Supplementary information: Supplementary data are available at Bioinformatics online.

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