This site needs JavaScript to work properly. Please enable it to take advantage of the complete set of features!

Skip to main page content

Add to Collections

Your saved search

Name of saved search:

Search terms:

Test search terms

Would you like email updates of new search results?

Yes
No

Email: (change)

Frequency:

Which day?

Which day?

Report format:

Send at most:

Send even when there aren't any new results

Optional text in email:

Your RSS Feed

. 1997:277:243-69.

doi: 10.1016/s0076-6879(97)77015-0.

Crystallographic refinement by simulated annealing: methods and applications

A T Brünger¹, L M Rice

Affiliations

PMID: 18488313
DOI: 10.1016/s0076-6879(97)77015-0

Crystallographic refinement by simulated annealing: methods and applications

A T Brünger et al. Methods Enzymol. 1997.

. 1997:277:243-69.

doi: 10.1016/s0076-6879(97)77015-0.

Authors

A T Brünger¹, L M Rice

Affiliation

¹ Howard Hughes Medical Institute and Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, Connecticut 06520, USA.

PMID: 18488313
DOI: 10.1016/s0076-6879(97)77015-0

No abstract available

PubMed Disclaimer

Similar articles

Crystallographic refinement by simulated annealing. Application to a 2.8 A resolution structure of aspartate aminotransferase.
Brünger AT. Brünger AT. J Mol Biol. 1988 Oct 5;203(3):803-16. doi: 10.1016/0022-2836(88)90211-2. J Mol Biol. 1988. PMID: 3062181
Refinement of the influenza virus hemagglutinin by simulated annealing.
Weis WI, Brünger AT, Skehel JJ, Wiley DC. Weis WI, et al. J Mol Biol. 1990 Apr 20;212(4):737-61. doi: 10.1016/0022-2836(90)90234-D. J Mol Biol. 1990. PMID: 2329580
Binding mode prediction for a flexible ligand in a flexible pocket using multi-conformation simulated annealing pseudo crystallographic refinement.
Ota N, Agard DA. Ota N, et al. J Mol Biol. 2001 Nov 30;314(3):607-17. doi: 10.1006/jmbi.2001.5147. J Mol Biol. 2001. PMID: 11846570
Slow-cooling protocols for crystallographic refinement by simulated annealing.
Brünger AT, Krukowski A, Erickson JW. Brünger AT, et al. Acta Crystallogr A. 1990 Jul 1;46 ( Pt 7):585-93. doi: 10.1107/s0108767390002355. Acta Crystallogr A. 1990. PMID: 2206482
X-ray refinement of protein structures by simulated annealing: test of the method on myohemerythrin.
Kuriyan J, Brünger AT, Karplus M, Hendrickson WA. Kuriyan J, et al. Acta Crystallogr A. 1989 Jun 1;45 ( Pt 6):396-409. doi: 10.1107/s0108767389000437. Acta Crystallogr A. 1989. PMID: 2619971

See all similar articles

Cited by

Tools for Model Building and Optimization into Near-Atomic Resolution Electron Cryo-Microscopy Density Maps.
DiMaio F, Chiu W. DiMaio F, et al. Methods Enzymol. 2016;579:255-76. doi: 10.1016/bs.mie.2016.06.003. Epub 2016 Aug 12. Methods Enzymol. 2016. PMID: 27572730 Free PMC article. Review.
Guide RNA biogenesis involves a novel RNase III family endoribonuclease in Trypanosoma brucei.
Madina BR, Kuppan G, Vashisht AA, Liang YH, Downey KM, Wohlschlegel JA, Ji X, Sze SH, Sacchettini JC, Read LK, Cruz-Reyes J. Madina BR, et al. RNA. 2011 Oct;17(10):1821-30. doi: 10.1261/rna.2815911. Epub 2011 Aug 2. RNA. 2011. PMID: 21810935 Free PMC article.
Structure of Hsp15 reveals a novel RNA-binding motif.
Staker BL, Korber P, Bardwell JC, Saper MA. Staker BL, et al. EMBO J. 2000 Feb 15;19(4):749-57. doi: 10.1093/emboj/19.4.749. EMBO J. 2000. PMID: 10675344 Free PMC article.
On the validation of crystallographic symmetry and the quality of structures.
Wang J. Wang J. Protein Sci. 2015 May;24(5):621-32. doi: 10.1002/pro.2595. Epub 2014 Dec 9. Protein Sci. 2015. PMID: 25352397 Free PMC article.
The protonation status of compound II in myoglobin, studied by a combination of experimental data and quantum chemical calculations: quantum refinement.
Nilsson K, Hersleth HP, Rod TH, Andersson KK, Ryde U. Nilsson K, et al. Biophys J. 2004 Nov;87(5):3437-47. doi: 10.1529/biophysj.104.041590. Epub 2004 Aug 31. Biophys J. 2004. PMID: 15339813 Free PMC article.

See all "Cited by" articles

LinkOut - more resources

Full Text Sources
- Elsevier Science
Other Literature Sources
- The Lens - Patent Citations Database