Structural genomics of pathogenic protozoa: an overview
- PMID: 18542886
- DOI: 10.1007/978-1-60327-058-8_33
Structural genomics of pathogenic protozoa: an overview
Abstract
The Structural Genomics of Pathogenic Protozoa (SGPP) Consortium aimed to determine crystal structures of proteins from trypanosomatid and malaria parasites in a high throughput manner. The pipeline of target selection, protein production, crystallization, and structure determination, is sketched. Special emphasis is given to a number of technology developments including domain prediction, the use of "co-crystallants," and capillary crystallization. "Fragment cocktail crystallography" for medical structural genomics is also described.
Similar articles
-
Higher-throughput approaches to crystallization and crystal structure determination.Biochem Soc Trans. 2008 Aug;36(Pt 4):771-5. doi: 10.1042/BST0360771. Biochem Soc Trans. 2008. PMID: 18631156
-
High throughput crystallography at SGC Toronto: an overview.Methods Mol Biol. 2008;426:515-21. doi: 10.1007/978-1-60327-058-8_34. Methods Mol Biol. 2008. PMID: 18542887 Review.
-
The high-throughput protein-to-structure pipeline at SECSG.Acta Crystallogr D Biol Crystallogr. 2005 Jun;61(Pt 6):679-84. doi: 10.1107/S0907444905013132. Epub 2005 May 26. Acta Crystallogr D Biol Crystallogr. 2005. PMID: 15930619
-
Structure of a ribulose 5-phosphate 3-epimerase from Plasmodium falciparum.Proteins. 2006 Feb 1;62(2):338-42. doi: 10.1002/prot.20764. Proteins. 2006. PMID: 16304640
-
Life in the fast lane for protein crystallization and X-ray crystallography.Prog Biophys Mol Biol. 2005 Jul;88(3):359-86. doi: 10.1016/j.pbiomolbio.2004.07.011. Prog Biophys Mol Biol. 2005. PMID: 15652250 Review.
Cited by
-
A chiral selectivity relaxed paralog of DTD for proofreading tRNA mischarging in Animalia.Nat Commun. 2018 Feb 6;9(1):511. doi: 10.1038/s41467-017-02204-w. Nat Commun. 2018. PMID: 29410408 Free PMC article.
-
Structure of Leishmania major methionyl-tRNA synthetase in complex with intermediate products methionyladenylate and pyrophosphate.Biochimie. 2011 Mar;93(3):570-82. doi: 10.1016/j.biochi.2010.11.015. Epub 2010 Dec 7. Biochimie. 2011. PMID: 21144880 Free PMC article.
-
Screening a fragment cocktail library using ultrafiltration.Anal Bioanal Chem. 2011 Sep;401(5):1585-91. doi: 10.1007/s00216-011-5225-7. Epub 2011 Jul 13. Anal Bioanal Chem. 2011. PMID: 21750879 Free PMC article.
-
Distinct genomic architecture of Plasmodium falciparum populations from South Asia.Mol Biochem Parasitol. 2016 Nov-Dec;210(1-2):1-4. doi: 10.1016/j.molbiopara.2016.07.005. Epub 2016 Jul 22. Mol Biochem Parasitol. 2016. PMID: 27457272 Free PMC article.
-
Unmet challenges of structural genomics.Curr Opin Struct Biol. 2010 Oct;20(5):587-97. doi: 10.1016/j.sbi.2010.08.001. Epub 2010 Aug 31. Curr Opin Struct Biol. 2010. PMID: 20810277 Free PMC article. Review.
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources