Polymorphic microsatellite loci for the common marmoset (Callithrix jacchus) designed using a cost- and time-efficient method
- PMID: 18561252
- PMCID: PMC2799112
- DOI: 10.1002/ajp.20581
Polymorphic microsatellite loci for the common marmoset (Callithrix jacchus) designed using a cost- and time-efficient method
Abstract
We describe a cost- and time-efficient method for designing new microsatellite markers in any species with substantial genomic DNA sequence data available. Using this technique, we report 14 new polymorphic dinucleotide microsatellite loci isolated from the common marmoset. The relative yield of new polymorphisms was higher with less labor than described in previous marmoset studies. Of 20 loci initially evaluated, 14 were polymorphic and amplified reliably (70% success rate). The number of alleles ranged from 3 to 9 with heterozygosity varying from 0.48 to 0.83.
Similar articles
-
The common marmoset: a new world primate species with limited Mhc class II variability.Proc Natl Acad Sci U S A. 1998 Sep 29;95(20):11745-50. doi: 10.1073/pnas.95.20.11745. Proc Natl Acad Sci U S A. 1998. PMID: 9751736 Free PMC article.
-
Development of microsatellite DNA markers and their chromosome assignment in the common marmoset.Am J Primatol. 2009 Nov;71(11):912-8. doi: 10.1002/ajp.20729. Am J Primatol. 2009. PMID: 19637280
-
MHC (major histocompatibility complex)-DRB genes and polymorphisms in common marmoset.J Mol Evol. 2000 Sep;51(3):214-22. doi: 10.1007/s002390010083. J Mol Evol. 2000. PMID: 11029066
-
Development of microsatellite markers for a hard-shelled mussel, Mytilus coruscus, and cross-species transfer.Genet Mol Res. 2013 Sep 27;12(3):4009-17. doi: 10.4238/2013.September.27.2. Genet Mol Res. 2013. PMID: 24089090
-
Isolation, characterization, inheritance and linkage of microsatellite DNA markers in white spruce (Picea glauca) and their usefulness in other spruce species.Mol Gen Genet. 2001 Feb;264(6):871-82. doi: 10.1007/s004380000377. Mol Gen Genet. 2001. PMID: 11254135
Cited by
-
Design and implementation of degenerate microsatellite primers for the mammalian clade.PLoS One. 2011;6(12):e29582. doi: 10.1371/journal.pone.0029582. Epub 2011 Dec 27. PLoS One. 2011. PMID: 22216321 Free PMC article.
-
Uniparental genetic markers to investigate hybridization in wild-born marmosets with a mixed phenotype among Callithrix aurita and invasive species.Sci Rep. 2022 Jan 27;12(1):1487. doi: 10.1038/s41598-021-04276-7. Sci Rep. 2022. PMID: 35087079 Free PMC article.
-
Natural and Anthropogenic Hybridization in Two Species of Eastern Brazilian Marmosets (Callithrix jacchus and C. penicillata).PLoS One. 2015 Jun 10;10(6):e0127268. doi: 10.1371/journal.pone.0127268. eCollection 2015. PLoS One. 2015. PMID: 26061111 Free PMC article.
-
A combined histological and MRI brain atlas of the common marmoset monkey, Callithrix jacchus.Brain Res Rev. 2009 Dec 11;62(1):1-18. doi: 10.1016/j.brainresrev.2009.09.001. Epub 2009 Sep 8. Brain Res Rev. 2009. PMID: 19744521 Free PMC article. Review.
References
-
- Brok HP, Bauer J, Jonker M, Blezer E, Amor S, Bontrop RE, Laman JD, ‘t Hart BA. Non-human primate models of multiple sclerosis. Immunol Rev. 2001;183:173–185. - PubMed
-
- Coote T, Bruford MW. Human microsatellites applicable for analysis of genetic variation in apes and Old World monkeys. J Hered. 1996;87:406–410. - PubMed
-
- Einspanier A, Lieder K, Bruns A, Husen B, Thole H, Simon C. Induction of endometriosis in the marmoset monkey (Callithrix jacchus) Mol Hum Reprod. 2006;12:291–299. - PubMed
-
- Escobar-Paramo P. Microsatellite primers for the wild brown capuchin monkey Cebus apella. Mol Ecol. 2000;9:107–108. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
LinkOut - more resources
Full Text Sources