Managing sequence data
- PMID: 18563367
- DOI: 10.1007/978-1-60327-159-2_1
Managing sequence data
Abstract
Nucleotide and protein sequences are the foundation for all bioinformatics tools and resources. Researchers can analyze these sequences to discover genes or predict the function of their products. The INSD (International Nucleotide Sequence Database--DDBJ/EMBL/GenBank) is an international, centralized primary sequence resource that is freely available on the internet. This database contains all publicly available nucleotide and derived protein sequences. This chapter summarizes the nucleotide sequence database resources, provides information on how to submit sequences to the databases, and explains how to access the sequence data.
Similar articles
-
Managing Sequence Data.Methods Mol Biol. 2017;1525:79-106. doi: 10.1007/978-1-4939-6622-6_4. Methods Mol Biol. 2017. PMID: 27896718
-
The EMBL Nucleotide Sequence Database.Nucleic Acids Res. 2004 Jan 1;32(Database issue):D27-30. doi: 10.1093/nar/gkh120. Nucleic Acids Res. 2004. PMID: 14681351 Free PMC article.
-
EMBL Nucleotide Sequence Database: developments in 2005.Nucleic Acids Res. 2006 Jan 1;34(Database issue):D10-5. doi: 10.1093/nar/gkj130. Nucleic Acids Res. 2006. PMID: 16381823 Free PMC article.
-
The IMGT/HLA sequence database.Rev Immunogenet. 2000;2(4):518-31. Rev Immunogenet. 2000. PMID: 12361093 Review.
-
miRBase: the microRNA sequence database.Methods Mol Biol. 2006;342:129-38. doi: 10.1385/1-59745-123-1:129. Methods Mol Biol. 2006. PMID: 16957372 Review.
Cited by
-
Studies on monitoring and tracking genetic resources: an executive summary.Stand Genomic Sci. 2009 Jul 20;1(1):78-86. doi: 10.4056/sigs.1491. Stand Genomic Sci. 2009. PMID: 21304641 Free PMC article.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources