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Comparative Study
. 2008 Oct 1;24(19):2252-3.
doi: 10.1093/bioinformatics/btn428. Epub 2008 Aug 19.

A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon  1 , Frank Schwach, Tamas Dalmay, Dan Maclean, David J Studholme, Vincent Moulton
Affiliations
Comparative Study

A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon et al. Bioinformatics. .

Abstract

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Availability: The tools are freely available for use at http://srna-tools.cmp.uea.ac.uk.

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