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Review
. 2008 Oct;18(5):601-8.
doi: 10.1016/j.sbi.2008.08.002. Epub 2008 Sep 29.

Experimental approaches for solution X-ray scattering and fiber diffraction

Affiliations
Review

Experimental approaches for solution X-ray scattering and fiber diffraction

H Tsuruta et al. Curr Opin Struct Biol. 2008 Oct.

Abstract

X-ray scattering and diffraction from non-crystalline systems have gained renewed interest in recent years, as focus shifts from the structural chemistry information gained by high-resolution studies to the context of structural physiology at larger length scales. Such techniques permit the study of isolated macromolecules as well as highly organized macromolecular assemblies as a whole under near-physiological conditions. Time-resolved approaches, made possible by advanced synchrotron instrumentation, add a crucial dimension to many of these investigations. This article reviews experimental approaches in non-crystalline X-ray scattering and diffraction that may be used to illuminate important scientific questions such as protein/nucleic acid folding and structure-function relationships in large macromolecular assemblies.

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Figures

Figure 1
Figure 1
HK97 bacterophage maturation kinetics studied by time-resolved solution x-ray scattering. A stopped-flow mixer (SF) initiates the maturation by a pH-jump, followed by a series of successive x-ray scattering pattern measurements. A synchrotron storage ring (SR) provides an intense x-ray beam. The direct beam is intercepted by a beam stop (blue disk) and surrounding circularly symmetric x-ray scattering is recorded as a function of time, and azimuthally averaged into one-dimensional patter as shown in the time course illustration. The peak position shifts toward small angle reflect the larger particle size in the final stage of the maturation. Courtesy of Dr. Kelly Lee, the Scripps Research Institute.
Figure 2
Figure 2
X-ray diffraction pattern from living Drosophila during tethered flight. The high intensity of the 19.3 nm first row line reflections (circles) indicates a high occupancy of actin binding sites by myosin heads poised for active contraction during the downstroke of the wingbeat.

References

    1. Koch MH, Bras W. Synchrotron radiation studies of non-crystalline systems. Ann. Rep. Prog. Chem., Sect. C: Phys. Chem. 2008;104:35–80.
    1. Toft KN, Vestergaard B, Nielsen SS, Snakenborg D, Jeppesen MG, Jacobsen JK, Arleth L, Kutter JP. High-throughput small angle X-ray scattering from proteins in solution using a microfluidic front-end. Anal Chem. 2008;80:3648–3654.A 200 nl microfluidic chamber has been developed for high-throughput protein characterization using solution x-ray scattering. A fully automated stream of data collection to low-resolution 3D structure modeling is proposed based on machine learning techniques.

    1. Petoukhov MV, Svergun DI. Analysis of X-ray and neutron scattering from biomacromolecular solutions. Curr Opin Struct Biol. 2007;17:562–571.This article reviews computational approaches developed by the authors’ group to obtain ab initio three dimensional models from solution x-ray or neutron scattering data as well as to construct multi-component structures based on known constituent structures. The programs from this group are highly user friendly and currently most widely used by structural biologists. Many of the programs can incorporate complementary information from other structural techniques.

    1. Roll-Mecak A, Vale RD. Structural basis of microtubule severing by the hereditary spastic paraplegia protein spastin. Nature. 2008;451:363–367.The hexameric structure model deduced from solution x-ray scattering data allowed the authors to interpret the monomeric crystal structure of the ATPase domain of the AAA ATPase spastin in the context of physiologically relevant hexamer assembly, a common oligomeric state in many AAA ATPases. A molecular mechanism is proposed for sepatin-mediated severing of microtubules, based on the 3D structure model and structure-guided mutagenesis.

    1. Sokolova AV, Kreplak L, Wedig T, Mucke N, Svergun DI, Herrmann H, Aebi U, Strelkov SV. Monitoring intermediate filament assembly by small-angle x-ray scattering reveals the molecular architecture of assembly intermediates. Proc Natl Acad Sci U S A. 2006;103:16206–16211. - PMC - PubMed

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