Large-scale modeling - a tool for conquering the complexity of the brain
- PMID: 18974793
- PMCID: PMC2525974
- DOI: 10.3389/neuro.11.001.2008
Large-scale modeling - a tool for conquering the complexity of the brain
Abstract
Is there any hope of achieving a thorough understanding of higher functions such as perception, memory, thought and emotion or is the stunning complexity of the brain a barrier which will limit such efforts for the foreseeable future? In this perspective we discuss methods to handle complexity, approaches to model building, and point to detailed large-scale models as a new contribution to the toolbox of the computational neuroscientist. We elucidate some aspects which distinguishes large-scale models and some of the technological challenges which they entail.
Keywords: brain; computational neuroscience; cortex; large-scale model; modeling methodology; parallel computing; simulation; subsampling.
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References
-
- Bhalla U. S. (2007). Genesis 3. URL: http://moose.sourceforge.net
-
- Brette R., Rudolph M., Carnevale T., Hines M., Beeman D., Bower J. M., Diesmann M., Morrison A., Goodman P. H., Harris F. C., Jr, Zirpe M., Natschläger T., Pecevski D., Ermentrout B., Djurfeldt M., Lansner A., Rochel O., Vieville T., Muller E., Davison A. P., Boustani S. E., Destexhe A. (2007). Simulation of networks of spiking neurons: a review of tools and strategies. J. Comput. Neurosci. 23, 349–39810.1007/s10827-007-0038-6 - DOI - PMC - PubMed
-
- Cannon R. C., Gewaltig M.-O., Gleeson P., Bhalla U. S., Cornelis H., Hines M. L., Howell F. W., Müller E., Stiles J. R., Wils S., De Schutter E. (2007). Interoperability of neuroscience modeling software: current status and future directions. Neuroinformatics 5, 127–13810.1007/s12021-007-0004-5 - DOI - PMC - PubMed
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