Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2009 Jun;15(6):723-9.
doi: 10.1007/s00894-008-0386-9. Epub 2008 Dec 11.

Expansion of the sigma-hole concept

Affiliations

Expansion of the sigma-hole concept

Jane S Murray et al. J Mol Model. 2009 Jun.

Abstract

The term "sigma-hole" originally referred to the electron-deficient outer lobe of a half-filled p (or nearly p) orbital involved in forming a covalent bond. If the electron deficiency is sufficient, there can result a region of positive electrostatic potential which can interact attractively (noncovalently) with negative sites on other molecules (sigma-hole bonding). The interaction is highly directional, along the extension of the covalent bond giving rise to the sigma-hole. Sigma-hole bonding has been observed, experimentally and computationally, for many covalently-bonded atoms of Groups V-VII. The positive character of the sigma-hole increases in going from the lighter to the heavier (more polarizable) atoms within a Group, and as the remainder of the molecule becomes more electron-withdrawing. In this paper, we show computationally that significantly positive sigma-holes, and subsequent noncovalent interactions, can also occur for atoms of Group IV. This observation, together with analogous ones for the molecules (H3C)2SO, (H3C)2SO2 and Cl3PO, demonstrates a need to expand the interpretation of the origins of sigma-holes: (1) While the bonding orbital does require considerable p character, in view of the well-established highly directional nature of sigma-hole bonding, a sizeable s contribution is not precluded. (2) It is possible for the bonding orbital to be doubly-occupied and forming a coordinate covalent bond.

PubMed Disclaimer

References

    1. J Mol Model. 2008 Aug;14(8):689-97 - PubMed
    1. J Comput Chem. 2006 Nov 30;27(15):1787-99 - PubMed
    1. J Mol Model. 2007 Oct;13(10):1033-8 - PubMed
    1. J Mol Model. 2007 Feb;13(2):305-11 - PubMed
    1. J Mol Model. 2007 Feb;13(2):291-6 - PubMed