Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2009 Mar 1;25(5):690-1.
doi: 10.1093/bioinformatics/btp025. Epub 2009 Jan 15.

MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions

Emilie Chautard  1 , Lionel Ballut, Nicolas Thierry-Mieg, Sylvie Ricard-Blum
Affiliations

MatrixDB, a database focused on extracellular protein-protein and protein-carbohydrate interactions

Emilie Chautard et al. Bioinformatics. .

Abstract

Summary: MatrixDB (http://matrixdb.ibcp.fr) is a database reporting mammalian protein-protein and protein-carbohydrate interactions involving extracellular molecules. It takes into account the full interaction repertoire of the extracellular matrix involving full-length molecules, fragments and multimers. The current version of MatrixDB contains 1972 interactions corresponding to 4412 experiments and involving 259 extracellular biomolecules.

Availability: MatrixDB is freely available at http://matrixdb.ibcp.fr

PubMed Disclaimer

References

    1. Bairoch A, et al. The Universal Protein Resource (UniProt) Nucleic Acids Res. 2005;33:D154–D159. - PMC - PubMed
    1. Breitkreutz BJ, et al. The BioGRID interaction database: 2008 update. Nucleic Acids Res. 2008;36:D637–D640. - PMC - PubMed
    1. Chatr-Aryamontri A, et al. MINT: the Molecular INTeraction database. Nucleic Acids Res. 2007;35:D572–D574. - PMC - PubMed
    1. Davis GE, et al. Regulation of tissue injury responses by the exposure of matricryptic sites within extracellular matrix molecules. Am. J. Pathol. 2000;156:1489–1498. - PMC - PubMed
    1. Degtyarenko K, et al. ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 2008;36:D344–D350. - PMC - PubMed

Publication types

MeSH terms

Substances