Residual dipolar couplings in short peptidic foldamers: combined analyses of backbone and side-chain conformations and evaluation of structure coordinates of rigid unnatural amino acids
- PMID: 19156789
- DOI: 10.1002/cbic.200800736
Residual dipolar couplings in short peptidic foldamers: combined analyses of backbone and side-chain conformations and evaluation of structure coordinates of rigid unnatural amino acids
Abstract
A flexible tool for rigid systems. Residual dipolar couplings (RDCs) have proven to be valuable NMR structural parameters that provide insights into the backbone conformations of short linear peptidic foldamers, as illustrated here. This study demonstrates that RDCs at natural abundance can provide essential structural information even in the case of short linear peptides with unnatural amino acids. In addition, they allow for the detection of proline side-chain conformations and are used as a quality check for the parameterizations of rigid unnatural amino acids.
Similar articles
-
Residual dipolar couplings in short peptides reveal systematic conformational preferences of individual amino acids.J Am Chem Soc. 2006 Oct 18;128(41):13508-14. doi: 10.1021/ja063606h. J Am Chem Soc. 2006. PMID: 17031964
-
Observation of residual dipolar couplings in short peptides.Proteins. 2003 Mar 1;50(4):546-51. doi: 10.1002/prot.10327. Proteins. 2003. PMID: 12577260
-
New helical foldamers: heterogeneous backbones with 1:2 and 2:1 alpha:beta-amino acid residue patterns.J Am Chem Soc. 2006 Apr 12;128(14):4538-9. doi: 10.1021/ja060281w. J Am Chem Soc. 2006. PMID: 16594667
-
Residual dipolar couplings as a tool to study molecular recognition of ubiquitin.Biochem Soc Trans. 2008 Dec;36(Pt 6):1433-7. doi: 10.1042/BST0361433. Biochem Soc Trans. 2008. PMID: 19021570 Review.
-
Residual dipolar couplings measured in unfolded proteins are sensitive to amino-acid-specific geometries as well as local conformational sampling.Biochem Soc Trans. 2012 Oct;40(5):989-94. doi: 10.1042/BST20120187. Biochem Soc Trans. 2012. PMID: 22988852 Review.
Cited by
-
Relative configuration of micrograms of natural compounds using proton residual chemical shift anisotropy.Nat Commun. 2020 Sep 1;11(1):4372. doi: 10.1038/s41467-020-18093-5. Nat Commun. 2020. PMID: 32873801 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources