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. 2009 Mar:Chapter 3:3.4.1-3.4.34.
doi: 10.1002/0471250953.bi0304s25.

Finding homologs in amino acid sequences using network BLAST searches

Istvan Steve Ladunga  1
Affiliations

Finding homologs in amino acid sequences using network BLAST searches

Istvan Steve Ladunga. Curr Protoc Bioinformatics. 2009 Mar.
No abstract available

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References

Literature Cited

References
    1. Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
    1. Altschul, S.F., Boguski, M.S., Gish, W., and Wootton, J.C. 1994. Issues in searching molecular sequence databases. Nat. Genet. 6:119-129.
    1. Altschul, S.F., Madden, T.L., Schaffer, A.A., Zhang, J., Zhang, Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucl. Acids Res. 25:3389-3402.
    1. Altschul, S.F., Wootton, J.C., Gertz, E.M., Agarwala, R., Morgulis, A., Schaffer, A.A., and Yu, Y.K. 2005. Protein database searches using compositionally adjusted substitution matrices. FEBS J. 272:5101-5109.
    1. Andreeva, A., Howorth, D., Chandonia, J.M., Brenner, S.E., Hubbard, T.J., Chothia, C., and Murzin, A.G. 2008. Data growth and its impact on the SCOP database: New developments. Nucl. Acids Res. 36:D419-D425.
Key References
    1. Altschul et al., 1994. See above.
    1. Altschul et al., 1997. See above.
    1. Baxevanis and Ouellette, 2005. See above.
    1. Gish and States, 1993. See above.
    1. Korf et al., 2003. See above.
Internet Resources
    1. http://blast.ncbi.nlm.nih.gov/
    1. http://www.ncbi.nlm.nih.gov/blast/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs
    1. http://www.ebi.ac.uk/blast2
    1. http://repeatmasker.genome.washington.edu/cgi-bin/RepeatMasker
    1. http://www.girinst.org/Censor_Server.html

MeSH terms

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