The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance
- PMID: 19304876
- PMCID: PMC2672634
- DOI: 10.1093/bioinformatics/btp134
The calibrated population resistance tool: standardized genotypic estimation of transmitted HIV-1 drug resistance
Abstract
The calibrated population resistance (CPR) tool is a web-accessible program for performing standardized genotypic estimation of transmitted HIV-1 drug resistance. The program is linked to the Stanford HIV drug resistance database and can additionally perform viral genotyping and algorithmic estimation of resistance to specific antiretroviral drugs.
Availability: http://cpr.stanford.edu/cpr/index.html.
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References
-
- Bennett DE, et al. The World Health Organization's global strategy for prevention and assessment of HIV drug resistance. Antivir. Ther. 2008a;13(Suppl. 2):1–13. - PubMed
-
- Bennett DE, et al. Recommendations for surveillance of transmitted HIV drug resistance in countries scaling up antiretroviral treatment. Antivir. Ther. 2008b;13(Suppl. 2):25–36. - PubMed
-
- Bertagnolio S, et al. HIV-1 drug resistance surveillance using dried whole blood spots. Antivir. Ther. 2007;12:107–113. - PubMed
-
- Gilks CF, et al. The WHO public-health approach to antiretroviral treatment against HIV in resource-limited settings. Lancet. 2006;368:505–510. - PubMed