Correlation between mutational destabilization of phage T4 lysozyme and increased unfolding rates
- PMID: 1988046
- DOI: 10.1021/bi00216a038
Correlation between mutational destabilization of phage T4 lysozyme and increased unfolding rates
Abstract
The thermodynamics and kinetics of unfolding of 28 bacteriophage T4 lysozyme variants were compared by using urea gradient gel electrophoresis. The mutations studied cause a variety of sequence changes at different residues throughout the polypeptide chain and result in a wide range of thermodynamic stabilities. A striking relationship was observed between the thermodynamic and kinetic effects of the amino acid replacements: All the substitutions that destabilized the native protein by 2 kcal/mol or more also increased the rate of unfolding. The observed increases in unfolding rate corresponded to a decrease in the activation energy of unfolding (delta Gu) at least 35% as large as the decrease in thermodynamic stability (delta Gu). Thus, the destabilizing lesions bring the free energy of the native state closer to that of both the unfolded state and the transition state for folding and unfolding. Since a large fraction of the mutational destabilization is expressed between the transition state and the native conformation, the changes in folding energetics cannot be accounted for by effects on the unfolded state alone. The results also suggest that interactions throughout much of the folded structure are altered in the formation of the transition state during unfolding.
Similar articles
-
Low-temperature unfolding of a mutant of phage T4 lysozyme. 2. Kinetic investigations.Biochemistry. 1989 Jan 24;28(2):691-9. doi: 10.1021/bi00428a042. Biochemistry. 1989. PMID: 2653428
-
pH-induced denaturation of proteins: a single salt bridge contributes 3-5 kcal/mol to the free energy of folding of T4 lysozyme.Biochemistry. 1990 Mar 6;29(9):2403-8. doi: 10.1021/bi00461a025. Biochemistry. 1990. PMID: 2337607
-
Thermodynamic stability and point mutations of bacteriophage T4 lysozyme.J Mol Biol. 1984 May 15;175(2):195-212. doi: 10.1016/0022-2836(84)90474-1. J Mol Biol. 1984. PMID: 6726809
-
The application of computational methods to the study of enzyme catalysis by triose-phosphate isomerase and stabilities of variants of bacteriophage T4 lysozyme.Ciba Found Symp. 1991;161:91-103; discussion 103-7. doi: 10.1002/9780470514146.ch7. Ciba Found Symp. 1991. PMID: 1814699 Review.
-
Engineering enzymes for stability.Curr Opin Struct Biol. 1996 Aug;6(4):546-50. doi: 10.1016/s0959-440x(96)80122-9. Curr Opin Struct Biol. 1996. PMID: 8794168 Review.
Cited by
-
Calculation of Protein Folding Thermodynamics Using Molecular Dynamics Simulations.J Chem Inf Model. 2023 Dec 25;63(24):7791-7806. doi: 10.1021/acs.jcim.3c01107. Epub 2023 Nov 13. J Chem Inf Model. 2023. PMID: 37955428 Free PMC article.
-
Thermal adaptation analyzed by comparison of protein sequences from mesophilic and extremely thermophilic Methanococcus species.Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):3578-83. doi: 10.1073/pnas.96.7.3578. Proc Natl Acad Sci U S A. 1999. PMID: 10097079 Free PMC article.
-
Effects of Ca2+ on the activity and stability of methanol dehydrogenase.J Protein Chem. 2000 Aug;19(6):469-73. doi: 10.1023/a:1026597314542. J Protein Chem. 2000. PMID: 11195971
-
Destabilizing effect of proline substitutions in two helical regions of T4 lysozyme: leucine 66 to proline and leucine 91 to proline.Protein Sci. 1996 Apr;5(4):742-51. doi: 10.1002/pro.5560050419. Protein Sci. 1996. PMID: 8845764 Free PMC article.
-
Protein co-translocational unfolding depends on the direction of pulling.Nat Commun. 2014 Sep 8;5:4841. doi: 10.1038/ncomms5841. Nat Commun. 2014. PMID: 25197784 Free PMC article.