Long terminal repeats of dwarf hamster endogenous retrovirus are highly diverged and do not maintain efficient transcription

Abstract

Recently we described a new endogenous proretrovirus of dwarf hamster Phodopus sungorus (MRS-Ps). Its sequence possesses evident homology with the endonuclease domain of the mouse mammary tumor virus pol gene. Here we present nucleotide sequence data on three clones of retroviral long terminal repeats. As many as 15% of substituted, deleted, and inserted base pairs were found while comparing these sequences. Hence, MRS-Ps seems to be rather an old genetic element which originated about 30 million years ago. One LTR is 877 bp long and contains numerous elements that control its transcriptional activity: TATA-box, glucocorticoid responsive element, NF1-binding site, etc. Nevertheless, this LTR does not govern efficient transcription of adjacent genes in a transient expression assay. In addition, we failed to find MRS-specific mRNA in adult, embryonic, and mammary tumor cells.