Software for Y-haplogroup predictions: a word of caution
- PMID: 20082090
- DOI: 10.1007/s00414-009-0404-1
Software for Y-haplogroup predictions: a word of caution
Abstract
The development of online software designed for genetic studies has been exponentially growing, providing numerous benefits to the scientific community. However, they should be used with care, since some require adjustments. The efficiency of two programs for haplogroup prediction was tested with 119 samples of known haplotypes and haplogroups from Argentine populations. Quantitative estimates of the predictive quality of both software systems were computed with the uncertainty coefficient; and sensitivity, specificity, positive, and negative likelihood ratios were also calculated to assert the reliability of both programs, showing high probabilities of assigning an incorrect haplogroup.
Comment in
-
Comments on the article, "Software for Y haplogroup predictions, a word of caution".Int J Legal Med. 2011 Nov;125(6):901-3; author reply 905-6. doi: 10.1007/s00414-010-0459-z. Epub 2010 Apr 27. Int J Legal Med. 2011. PMID: 20422204 No abstract available.
Similar articles
-
Y chromosome haplogroup diversity in a Mestizo population of Nicaragua.Forensic Sci Int Genet. 2012 Dec;6(6):e192-5. doi: 10.1016/j.fsigen.2012.06.011. Epub 2012 Jul 6. Forensic Sci Int Genet. 2012. PMID: 22770600
-
Male lineages in Brazilian populations and performance of haplogroup prediction tools.Forensic Sci Int Genet. 2020 Jan;44:102163. doi: 10.1016/j.fsigen.2019.102163. Epub 2019 Oct 15. Forensic Sci Int Genet. 2020. PMID: 31704485
-
Y-SNP analysis versus Y-haplogroup predictor in the Slovak population.Anthropol Anz. 2014;71(3):275-85. doi: 10.1127/0003-5548/2014/0368. Anthropol Anz. 2014. PMID: 25065120
-
Hierarchical Y-SNP assay to study the hidden diversity and phylogenetic relationship of native populations in South America.Forensic Sci Int Genet. 2011 Mar;5(2):100-4. doi: 10.1016/j.fsigen.2010.08.016. Epub 2010 Oct 6. Forensic Sci Int Genet. 2011. PMID: 20932815
-
Male-specific contributions to the Brazilian population of Espirito Santo.Int J Legal Med. 2016 May;130(3):679-81. doi: 10.1007/s00414-015-1214-2. Epub 2015 Jun 16. Int J Legal Med. 2016. PMID: 26076592 Review.
Cited by
-
Genetic Diversity in the Lesser Antilles and Its Implications for the Settlement of the Caribbean Basin.PLoS One. 2015 Oct 8;10(10):e0139192. doi: 10.1371/journal.pone.0139192. eCollection 2015. PLoS One. 2015. PMID: 26447794 Free PMC article.
-
Testing the informativeness of Y-STR and mitochondrial DNA control region markers in an attempt to predict ancestry of World War II victims from Slovenian mass grave.Int J Legal Med. 2025 Mar;139(2):483-493. doi: 10.1007/s00414-024-03368-z. Epub 2024 Nov 16. Int J Legal Med. 2025. PMID: 39547996
-
Y-chromosomal diversity of the Valachs from the Czech Republic: model for isolated population in Central Europe.Croat Med J. 2011 Jun;52(3):358-67. doi: 10.3325/cmj.2011.52.358. Croat Med J. 2011. PMID: 21674832 Free PMC article.
-
Y-DNA genetic evidence reveals several different ancient origins in the Brahmin population.Mol Genet Genomics. 2021 Jan;296(1):67-78. doi: 10.1007/s00438-020-01725-2. Epub 2020 Sep 25. Mol Genet Genomics. 2021. PMID: 32978661
-
Population structure in Argentina.PLoS One. 2018 May 1;13(5):e0196325. doi: 10.1371/journal.pone.0196325. eCollection 2018. PLoS One. 2018. PMID: 29715266 Free PMC article.
References
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources