Epistatic interactions
- PMID: 20196744
- PMCID: PMC2861312
- DOI: 10.2202/1544-6115.1517
Epistatic interactions
Abstract
The term "epistasis" is sometimes used to describe some form of statistical interaction between genetic factors and is alternatively sometimes used to describe instances in which the effect of a particular genetic variant is masked by a variant at another locus. In general statistical tests for interaction are of limited use in detecting "epistasis" in the sense of masking. It is, however, shown that there are relations between empirical data patterns and epistasis that have not been previously noted. These relations can sometimes be exploited to empirically test for "epistatic interactions" in the sense of the masking of the effect of a particular genetic variant by a variant at another locus.
Similar articles
-
Compositional epistasis: an epidemiologic perspective.Methods Mol Biol. 2015;1253:197-216. doi: 10.1007/978-1-4939-2155-3_11. Methods Mol Biol. 2015. PMID: 25403534
-
Tests for compositional epistasis under single interaction-parameter models.Ann Hum Genet. 2011 Jan;75(1):146-56. doi: 10.1111/j.1469-1809.2010.00600.x. Epub 2010 Aug 20. Ann Hum Genet. 2011. PMID: 20726965 Free PMC article.
-
Identifying quantitative trait locus by genetic background interactions in association studies.Genetics. 2007 May;176(1):553-61. doi: 10.1534/genetics.106.062992. Epub 2006 Dec 18. Genetics. 2007. PMID: 17179077 Free PMC article.
-
Epistasis: what it means, what it doesn't mean, and statistical methods to detect it in humans.Hum Mol Genet. 2002 Oct 1;11(20):2463-8. doi: 10.1093/hmg/11.20.2463. Hum Mol Genet. 2002. PMID: 12351582 Review.
-
On the relationship between epistasis and genetic variance heterogeneity.J Exp Bot. 2017 Nov 28;68(20):5431-5438. doi: 10.1093/jxb/erx283. J Exp Bot. 2017. PMID: 28992256 Review.
Cited by
-
BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies.Am J Hum Genet. 2010 Sep 10;87(3):325-40. doi: 10.1016/j.ajhg.2010.07.021. Am J Hum Genet. 2010. PMID: 20817139 Free PMC article.
-
Invited commentary: Some advantages of the relative excess risk due to interaction (RERI)--towards better estimators of additive interaction.Am J Epidemiol. 2014 Mar 15;179(6):670-1. doi: 10.1093/aje/kwt316. Epub 2014 Jan 31. Am J Epidemiol. 2014. PMID: 24488514 Free PMC article.
-
Interaction of HLA Class II rs9272219 and TMPO rs17028450 (Arg690Cys) Variants Affects Neuromyelitis Optica Spectrum Disorder Susceptibility in an Admixed Mexican Population.Front Genet. 2021 Jul 15;12:647343. doi: 10.3389/fgene.2021.647343. eCollection 2021. Front Genet. 2021. PMID: 34335680 Free PMC article.
-
Stacked neural network for predicting polygenic risk score.Sci Rep. 2024 May 21;14(1):11632. doi: 10.1038/s41598-024-62513-1. Sci Rep. 2024. PMID: 38773257 Free PMC article.
-
Additive interaction in the presence of a mismeasured outcome.Am J Epidemiol. 2015 Jan 1;181(1):81-2. doi: 10.1093/aje/kwu351. Epub 2014 Dec 16. Am J Epidemiol. 2015. PMID: 25515166 Free PMC article. No abstract available.
References
-
- Bateson W. Mendel’s Principles of Heredity. Cambridge University Press; Cambridge: 1909.
Publication types
MeSH terms
Grants and funding
LinkOut - more resources
Full Text Sources