miRBase: microRNA sequences and annotation
- PMID: 20205188
- DOI: 10.1002/0471250953.bi1209s29
miRBase: microRNA sequences and annotation
Abstract
miRBase is the central repository for microRNA (miRNA) sequence information. miRBase has a role in defining the nomenclature for miRNA genes and assigning names to novel miRNAs for publication in peer-reviewed journals. The online miRBase database is a resource containing all published miRNA sequences, together with textual annotation and links to the primary literature and to other secondary databases. The database provides a variety of methods to query the data, by specific searches of sequences and associated text and literature. All miRBase data are also available for download from the miRBase FTP site.
(c) 2010 by John Wiley & Sons, Inc.
Similar articles
-
miRBase: the microRNA sequence database.Methods Mol Biol. 2006;342:129-38. doi: 10.1385/1-59745-123-1:129. Methods Mol Biol. 2006. PMID: 16957372 Review.
-
miRBase: microRNA sequences, targets and gene nomenclature.Nucleic Acids Res. 2006 Jan 1;34(Database issue):D140-4. doi: 10.1093/nar/gkj112. Nucleic Acids Res. 2006. PMID: 16381832 Free PMC article.
-
miRBase: tools for microRNA genomics.Nucleic Acids Res. 2008 Jan;36(Database issue):D154-8. doi: 10.1093/nar/gkm952. Epub 2007 Nov 8. Nucleic Acids Res. 2008. PMID: 17991681 Free PMC article.
-
miRBase: integrating microRNA annotation and deep-sequencing data.Nucleic Acids Res. 2011 Jan;39(Database issue):D152-7. doi: 10.1093/nar/gkq1027. Epub 2010 Oct 30. Nucleic Acids Res. 2011. PMID: 21037258 Free PMC article.
-
Creating and maintaining a high-confidence microRNA repository for crop research: A brief review and re-examination of the current crop microRNA registries.J Plant Physiol. 2022 Mar;270:153636. doi: 10.1016/j.jplph.2022.153636. Epub 2022 Feb 2. J Plant Physiol. 2022. PMID: 35124290 Review.
Cited by
-
Circular RNA-MicroRNA-MRNA interaction predictions in SARS-CoV-2 infection.J Integr Bioinform. 2021 Mar 17;18(1):45-50. doi: 10.1515/jib-2020-0047. J Integr Bioinform. 2021. PMID: 33725751 Free PMC article.
-
Microarray-based transcriptomic analysis of differences between long-term gregarious and solitarious desert locusts.PLoS One. 2011;6(11):e28110. doi: 10.1371/journal.pone.0028110. Epub 2011 Nov 23. PLoS One. 2011. PMID: 22132225 Free PMC article.
-
MicroRNA-330-5p as a Putative Modulator of Neoadjuvant Chemoradiotherapy Sensitivity in Oesophageal Adenocarcinoma.PLoS One. 2015 Jul 29;10(7):e0134180. doi: 10.1371/journal.pone.0134180. eCollection 2015. PLoS One. 2015. PMID: 26221725 Free PMC article.
-
A Meta-Analysis: Identification of Common Mir-145 Target Genes that have Similar Behavior in Different GEO Datasets.PLoS One. 2016 Sep 21;11(9):e0161491. doi: 10.1371/journal.pone.0161491. eCollection 2016. PLoS One. 2016. PMID: 27655328 Free PMC article.
-
High expression of microRNA-155 is associated with the aggressive malignant behavior of gallbladder carcinoma.Oncol Rep. 2013 Jul;30(1):17-24. doi: 10.3892/or.2013.2443. Epub 2013 May 9. Oncol Rep. 2013. PMID: 23660842 Free PMC article.
References
Literature Cited
-
- Altschul, S.F., Gish, W., Miller, W., Myers, E.W., and Lipman, D.J. 1990. Basic local alignment search tool. J. Mol. Biol 215:403-410.
-
- Ambros, V., Bartel, B., Bartel, D.P., Burge, C.B., Carrington, J.C., Chen, X., Dreyfuss, G., Eddy, S.R., Griffiths-Jones, S., Marshall, M., Matzke, M., Ruvkun, G., and Tuschl, T. 2003. A uniform system for microRNA annotation. RNA 9:277-279.
-
- Bartel, D.P. 2004. MicroRNAs: Genomics, biogenesis, mechanism, and function. Cell 116:281-297.
-
- Bartel, D.P. 2009. MicroRNAs: Target recognition and regulatory functions. Cell 136:215-233.
-
- Caudy, A.A., Myers, M., Hannon, G.J., and Hammond, S.M. 2002. Fragile X-related protein and VIG associate with the RNA interference machinery. Genes Dev. 16:2491-2496.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources