Skip to main page content
U.S. flag

An official website of the United States government

Dot gov

The .gov means it’s official.
Federal government websites often end in .gov or .mil. Before sharing sensitive information, make sure you’re on a federal government site.

Https

The site is secure.
The https:// ensures that you are connecting to the official website and that any information you provide is encrypted and transmitted securely.

Access keys NCBI Homepage MyNCBI Homepage Main Content Main Navigation
. 2010 Apr;24(4):343-53.
doi: 10.1007/s10822-010-9340-x. Epub 2010 Mar 30.

Prediction of tautomer ratios by embedded-cluster integral equation theory

Affiliations

Prediction of tautomer ratios by embedded-cluster integral equation theory

Stefan M Kast et al. J Comput Aided Mol Des. 2010 Apr.

Erratum in

  • J Comput Aided Mol Des. 2010 Apr;24(4):355

Abstract

The "embedded cluster reference interaction site model" (EC-RISM) approach combines statistical-mechanical integral equation theory and quantum-chemical calculations for predicting thermodynamic data for chemical reactions in solution. The electronic structure of the solute is determined self-consistently with the structure of the solvent that is described by 3D RISM integral equation theory. The continuous solvent-site distribution is mapped onto a set of discrete background charges ("embedded cluster") that represent an additional contribution to the molecular Hamiltonian. The EC-RISM analysis of the SAMPL2 challenge set of tautomers proceeds in three stages. Firstly, the group of compounds for which quantitative experimental free energy data was provided was taken to determine appropriate levels of quantum-chemical theory for geometry optimization and free energy prediction. Secondly, the resulting workflow was applied to the full set, allowing for chemical interpretations of the results. Thirdly, disclosure of experimental data for parts of the compounds facilitated a detailed analysis of methodical issues and suggestions for future improvements of the model. Without specifically adjusting parameters, the EC-RISM model yields the smallest value of the root mean square error for the first set (0.6 kcal mol(-1)) as well as for the full set of quantitative reaction data (2.0 kcal mol(-1)) among the SAMPL2 participants.

PubMed Disclaimer

References

    1. J Comput Chem. 2004 Jul 15;25(9):1157-74 - PubMed
    1. J Phys Chem B. 2008 Apr 10;112(14):4337-43 - PubMed
    1. J Chem Phys. 2008 Dec 21;129(23):236101 - PubMed

Publication types

LinkOut - more resources